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Cluster: Rep_616_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_616_c_1 Rep_616_c_1_176 213032 214405 + 2.A.1.4.3
CAZyme Rep_616_c_1 Rep_616_c_1_177 214425 216446 + GH127
STP Rep_616_c_1 Rep_616_c_1_178 216541 217119 - TetR_N
TC Rep_616_c_1 Rep_616_c_1_179 217141 218244 - 3.A.1.105.4
TC Rep_616_c_1 Rep_616_c_1_180 218425 219516 - 3.A.1.105.4
TC Rep_616_c_1 Rep_616_c_1_181 219518 220261 - 3.A.1.105.4
TC Rep_616_c_1 Rep_616_c_1_182 220251 221174 - 3.A.1.105.4
TC Rep_616_c_1 Rep_616_c_1_183 221189 222082 - 3.A.1.105.4
pfam Rep_616_c_1 Rep_616_c_1_184 222096 223376 - OEP | OEP
STP Rep_616_c_1 Rep_616_c_1_185 223380 224024 - TetR_N
CAZyme Rep_616_c_1 Rep_616_c_1_186 224182 225897 + GT83
pfam Rep_616_c_1 Rep_616_c_1_187 225894 226262 + GtrA_DPMS_TM
pfam Rep_616_c_1 Rep_616_c_1_188 226259 227479 - GT87
CAZyme Rep_616_c_1 Rep_616_c_1_189 227486 228205 - GT2
pfam Rep_616_c_1 Rep_616_c_1_190 228253 228834 + Acetyltransf_1 | FR47 | Acetyltransf_7 | Acetyltransf_10
pfam Rep_616_c_1 Rep_616_c_1_191 228831 231494 + AsmA | DUF748
TC Rep_616_c_1 Rep_616_c_1_192 231500 232417 + 2.A.124.1.2
Gene ID: Rep_616_c_1_176
Type: TC
Location: 213032 - 214405 (+)
Gene ID: Rep_616_c_1_177
Type: CAZyme
Location: 214425 - 216446 (+)
Gene ID: Rep_616_c_1_178
Type: STP
Location: 216541 - 217119 (-)
Gene ID: Rep_616_c_1_179
Type: TC
Location: 217141 - 218244 (-)
Gene ID: Rep_616_c_1_180
Type: TC
Location: 218425 - 219516 (-)
Gene ID: Rep_616_c_1_181
Type: TC
Location: 219518 - 220261 (-)
Gene ID: Rep_616_c_1_182
Type: TC
Location: 220251 - 221174 (-)
Gene ID: Rep_616_c_1_183
Type: TC
Location: 221189 - 222082 (-)
Gene ID: Rep_616_c_1_184
Type: pfam
Location: 222096 - 223376 (-)
Gene ID: Rep_616_c_1_185
Type: STP
Location: 223380 - 224024 (-)
Gene ID: Rep_616_c_1_186
Type: CAZyme
Location: 224182 - 225897 (+)
Gene ID: Rep_616_c_1_187
Type: pfam
Location: 225894 - 226262 (+)
Gene ID: Rep_616_c_1_188
Type: pfam
Location: 226259 - 227479 (-)
Gene ID: Rep_616_c_1_189
Type: CAZyme
Location: 227486 - 228205 (-)
Gene ID: Rep_616_c_1_190
Type: pfam
Location: 228253 - 228834 (+)
Gene ID: Rep_616_c_1_191
Type: pfam
Location: 228831 - 231494 (+)
Gene ID: Rep_616_c_1_192
Type: TC
Location: 231500 - 232417 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_616_c_1_183 vegetarian > omnivore 1.02845 0.03785

🧭 Explore Read Mapping of CGC

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