Genome Details
Selected Rep_genome_ID: HRGMv2_2326
Total Genomes Found: 6
Total Genomes Found: 6
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp000432335
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| Baumann-DudenhoefferAM_2018_SRR7217911_bin.18 | 2,674,411 | 96.51% | 0% | US | North America | ELGG |
| CGMR062412 | 2,731,765 | 92.41% | 1.9% | China | Asia | CGMR |
| HRGMv2_2326 | 2,779,921 | 99.36% | 0.632% | UK | Europe | HRGM |
| Rep_2252 | 2,911,793 | 98.9122% | 1.26582% | NA | NA | WIS |
| SPMP15_bin.1 | 2,896,849 | 92.99% | 0.63% | Singapore | Asia | SPMP |
| SPMP75_bin.49 | 2,851,100 | 94.3% | 0.63% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2326_CGC32 | CGCFAM_00011 | Yes | 4 | 1 | |
| HRGMv2_2326_CGC27 | CGCFAM_00035 | Yes | 8 | 2 | fructan |
| HRGMv2_2326_CGC33 | CGCFAM_00064 | Yes | 4 | 2 | |
| HRGMv2_2326_CGC22 | CGCFAM_00253 | Yes | 10 | 4 | |
| HRGMv2_2326_CGC2 | CGCFAM_00869 | Yes | 3 | 1 | |
| HRGMv2_2326_CGC20 | CGCFAM_01082 | Yes | 3 | 1 | |
| HRGMv2_2326_CGC35 | CGCFAM_01195 | Yes | 3 | 1 | |
| HRGMv2_2326_CGC14 | CGCFAM_01758 | Yes | 3 | 1 | |
| HRGMv2_2326_CGC26 | CGCFAM_02597 | Yes | 3 | 1 | |
| HRGMv2_2326_CGC9 | CGCFAM_03661 | Yes | 12 | 2 | |
| HRGMv2_2326_CGC17 | CGCFAM_04682 | Yes | 11 | 4 | |
| HRGMv2_2326_CGC3 | CGCFAM_04982 | Yes | 3 | 1 | |
| HRGMv2_2326_CGC40 | CGCFAM_05239 | Yes | 5 | 1 | |
| HRGMv2_2326_CGC16 | CGCFAM_05242 | Yes | 7 | 2 | |
| HRGMv2_2326_CGC10 | CGCFAM_10044 | Yes | 7 | 1 | |
| HRGMv2_2326_CGC24 | CGCFAM_10045 | Yes | 8 | 2 | |
| HRGMv2_2326_CGC37 | CGCFAM_10046 | Yes | 4 | 1 | |
| HRGMv2_2326_CGC38 | CGCFAM_10047 | Yes | 12 | 1 | |
| HRGMv2_2326_CGC39 | CGCFAM_10048 | Yes | 4 | 1 |
Top CAZyme Families