Cluster: HRGMv2_2326_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2326
- CGC Family ID: CGCFAM_05242
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_214 | 252908 | 253714 | - | 3.D.10.1.4 |
| pfam | HRGMv2_2326_2 | HRGMv2_2326_2_215 | 253737 | 254684 | - | Ldh_1_N | Ldh_1_C | F420_oxidored |
| CAZyme | HRGMv2_2326_2 | HRGMv2_2326_2_216 | 255427 | 257229 | - | GH2 |
| TF | HRGMv2_2326_2 | HRGMv2_2326_2_217 | 257938 | 258858 | - | HTH_5 |
| CAZyme | HRGMv2_2326_2 | HRGMv2_2326_2_218 | 259011 | 260816 | - | GH2 |
| pfam | HRGMv2_2326_2 | HRGMv2_2326_2_219 | 260832 | 261845 | - | Acyl_transf_3 | HGSNAT_cat |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_220 | 261850 | 262680 | - | 3.A.1.1.36 |
Gene ID: HRGMv2_2326_2_214
Type: TC
Location: 252908 - 253714 (-)
Type: TC
Location: 252908 - 253714 (-)
Gene ID: HRGMv2_2326_2_215
Type: pfam
Location: 253737 - 254684 (-)
Type: pfam
Location: 253737 - 254684 (-)
Gene ID: HRGMv2_2326_2_216
Type: CAZyme
Location: 255427 - 257229 (-)
Type: CAZyme
Location: 255427 - 257229 (-)
Gene ID: HRGMv2_2326_2_217
Type: TF
Location: 257938 - 258858 (-)
Type: TF
Location: 257938 - 258858 (-)
Gene ID: HRGMv2_2326_2_218
Type: CAZyme
Location: 259011 - 260816 (-)
Type: CAZyme
Location: 259011 - 260816 (-)
Gene ID: HRGMv2_2326_2_219
Type: pfam
Location: 260832 - 261845 (-)
Type: pfam
Location: 260832 - 261845 (-)
Gene ID: HRGMv2_2326_2_220
Type: TC
Location: 261850 - 262680 (-)
Type: TC
Location: 261850 - 262680 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp000432335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.