Cluster: HRGMv2_2326_CGC40
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2326
- CGC Family ID: CGCFAM_05239
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2326_13 | HRGMv2_2326_13_55 | 59462 | 61201 | - | 3.A.1.135.5 |
| TC | HRGMv2_2326_13 | HRGMv2_2326_13_56 | 61198 | 62934 | - | 3.A.1.135.5 |
| CAZyme | HRGMv2_2326_13 | HRGMv2_2326_13_57 | 62900 | 64459 | - | GH77 |
| TF | HRGMv2_2326_13 | HRGMv2_2326_13_58 | 64769 | 65752 | - | HTH_AraC |
| TC | HRGMv2_2326_13 | HRGMv2_2326_13_59 | 66012 | 67655 | - | 2.A.58.2.2 |
Gene ID: HRGMv2_2326_13_55
Type: TC
Location: 59462 - 61201 (-)
Type: TC
Location: 59462 - 61201 (-)
Gene ID: HRGMv2_2326_13_56
Type: TC
Location: 61198 - 62934 (-)
Type: TC
Location: 61198 - 62934 (-)
Gene ID: HRGMv2_2326_13_57
Type: CAZyme
Location: 62900 - 64459 (-)
Type: CAZyme
Location: 62900 - 64459 (-)
Gene ID: HRGMv2_2326_13_58
Type: TF
Location: 64769 - 65752 (-)
Type: TF
Location: 64769 - 65752 (-)
Gene ID: HRGMv2_2326_13_59
Type: TC
Location: 66012 - 67655 (-)
Type: TC
Location: 66012 - 67655 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp000432335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.