Cluster: HRGMv2_2326_CGC38
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2326
- CGC Family ID: CGCFAM_10047
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2326_11 | HRGMv2_2326_11_16 | 15731 | 16771 | - | 3.A.1.11.2 |
| TC | HRGMv2_2326_11 | HRGMv2_2326_11_17 | 16768 | 17427 | - | 3.A.1.8.1 |
| STP | HRGMv2_2326_11 | HRGMv2_2326_11_18 | 17451 | 18329 | - | SBP_bac_1 |
| NULL(UNKNOWN) | HRGMv2_2326_11 | HRGMv2_2326_11_19 | 18699 | 18956 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2326_11 | HRGMv2_2326_11_20 | 18978 | 20345 | - | 2.A.66.1.33 |
| CAZyme | HRGMv2_2326_11 | HRGMv2_2326_11_21 | 20429 | 23524 | - | GH38 |
| pfam | HRGMv2_2326_11 | HRGMv2_2326_11_22 | 23662 | 24186 | - | Macro |
| NULL(UNKNOWN) | HRGMv2_2326_11 | HRGMv2_2326_11_23 | 24249 | 25226 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2326_11 | HRGMv2_2326_11_24 | 25213 | 26721 | - | 2.A.50.2.1 |
| NULL(UNKNOWN) | HRGMv2_2326_11 | HRGMv2_2326_11_25 | 26725 | 26955 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_2326_11 | HRGMv2_2326_11_26 | 26976 | 28178 | - | Orn_DAP_Arg_deC | Ala_racemase_N | Orn_Arg_deC_N |
| TC | HRGMv2_2326_11 | HRGMv2_2326_11_27 | 28175 | 29695 | - | 4.C.1.1.7 |
Gene ID: HRGMv2_2326_11_16
Type: TC
Location: 15731 - 16771 (-)
Type: TC
Location: 15731 - 16771 (-)
Gene ID: HRGMv2_2326_11_17
Type: TC
Location: 16768 - 17427 (-)
Type: TC
Location: 16768 - 17427 (-)
Gene ID: HRGMv2_2326_11_18
Type: STP
Location: 17451 - 18329 (-)
Type: STP
Location: 17451 - 18329 (-)
Gene ID: HRGMv2_2326_11_19
Type:
Location: 18699 - 18956 (-)
Type:
Location: 18699 - 18956 (-)
Gene ID: HRGMv2_2326_11_20
Type: TC
Location: 18978 - 20345 (-)
Type: TC
Location: 18978 - 20345 (-)
Gene ID: HRGMv2_2326_11_21
Type: CAZyme
Location: 20429 - 23524 (-)
Type: CAZyme
Location: 20429 - 23524 (-)
Gene ID: HRGMv2_2326_11_22
Type: pfam
Location: 23662 - 24186 (-)
Type: pfam
Location: 23662 - 24186 (-)
Gene ID: HRGMv2_2326_11_23
Type:
Location: 24249 - 25226 (-)
Type:
Location: 24249 - 25226 (-)
Gene ID: HRGMv2_2326_11_24
Type: TC
Location: 25213 - 26721 (-)
Type: TC
Location: 25213 - 26721 (-)
Gene ID: HRGMv2_2326_11_25
Type:
Location: 26725 - 26955 (-)
Type:
Location: 26725 - 26955 (-)
Gene ID: HRGMv2_2326_11_26
Type: pfam
Location: 26976 - 28178 (-)
Type: pfam
Location: 26976 - 28178 (-)
Gene ID: HRGMv2_2326_11_27
Type: TC
Location: 28175 - 29695 (-)
Type: TC
Location: 28175 - 29695 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp000432335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.