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Cluster: HRGMv2_2326_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2326_2 HRGMv2_2326_2_229 272104 273207 - 9.B.10.1.1
STP HRGMv2_2326_2 HRGMv2_2326_2_230 273484 274509 + Aminotran_1_2
CAZyme HRGMv2_2326_2 HRGMv2_2326_2_231 274616 275995 - GH29
CAZyme HRGMv2_2326_2 HRGMv2_2326_2_232 276027 277874 - GH20
TC HRGMv2_2326_2 HRGMv2_2326_2_233 277894 278805 - 3.A.1.1.29
TC HRGMv2_2326_2 HRGMv2_2326_2_234 278822 279736 - 3.A.1.1.29
NULL(UNKNOWN) HRGMv2_2326_2 HRGMv2_2326_2_235 279811 281571 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_2326_2 HRGMv2_2326_2_236 281822 283531 - 8.A.59.2.1
TF HRGMv2_2326_2 HRGMv2_2326_2_237 283528 284670 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_2326_2 HRGMv2_2326_2_238 285310 287214 - CBM48 | GH13_9
CAZyme HRGMv2_2326_2 HRGMv2_2326_2_239 287249 288616 - GH13_20
Gene ID: HRGMv2_2326_2_229
Type: TC
Location: 272104 - 273207 (-)
Gene ID: HRGMv2_2326_2_230
Type: STP
Location: 273484 - 274509 (+)
Gene ID: HRGMv2_2326_2_231
Type: CAZyme
Location: 274616 - 275995 (-)
Gene ID: HRGMv2_2326_2_232
Type: CAZyme
Location: 276027 - 277874 (-)
Gene ID: HRGMv2_2326_2_233
Type: TC
Location: 277894 - 278805 (-)
Gene ID: HRGMv2_2326_2_234
Type: TC
Location: 278822 - 279736 (-)
Gene ID: HRGMv2_2326_2_235
Type:
Location: 279811 - 281571 (-)
Gene ID: HRGMv2_2326_2_236
Type: TC
Location: 281822 - 283531 (-)
Gene ID: HRGMv2_2326_2_237
Type: TF
Location: 283528 - 284670 (-)
Gene ID: HRGMv2_2326_2_238
Type: CAZyme
Location: 285310 - 287214 (-)
Gene ID: HRGMv2_2326_2_239
Type: CAZyme
Location: 287249 - 288616 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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