Cluster: HRGMv2_2326_CGC9
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2326
- CGC Family ID: CGCFAM_03661
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_4 | 2354 | 3340 | - | 3.A.1.5.13 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_5 | 3345 | 4313 | - | 3.A.1.5.13 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_6 | 4319 | 5155 | - | 3.A.1.5.13 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_7 | 5174 | 6172 | - | 3.A.1.5.13 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_8 | 6323 | 8308 | - | 3.A.1.5.13 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_9 | 8831 | 10174 | - | 2.A.25.1.4 |
| pfam | HRGMv2_2326_2 | HRGMv2_2326_2_10 | 10755 | 12275 | - | GalP_UDP_transf | GalP_UDP_tr_C |
| CAZyme | HRGMv2_2326_2 | HRGMv2_2326_2_11 | 12337 | 14364 | - | GH42 |
| CAZyme | HRGMv2_2326_2 | HRGMv2_2326_2_12 | 14543 | 17581 | - | GH2 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_13 | 17653 | 18459 | - | 3.A.1.1.4 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_14 | 18456 | 19340 | - | 3.A.1.1.4 |
| TC | HRGMv2_2326_2 | HRGMv2_2326_2_15 | 19450 | 20814 | - | 3.A.1.1.4 |
Gene ID: HRGMv2_2326_2_4
Type: TC
Location: 2354 - 3340 (-)
Type: TC
Location: 2354 - 3340 (-)
Gene ID: HRGMv2_2326_2_5
Type: TC
Location: 3345 - 4313 (-)
Type: TC
Location: 3345 - 4313 (-)
Gene ID: HRGMv2_2326_2_6
Type: TC
Location: 4319 - 5155 (-)
Type: TC
Location: 4319 - 5155 (-)
Gene ID: HRGMv2_2326_2_7
Type: TC
Location: 5174 - 6172 (-)
Type: TC
Location: 5174 - 6172 (-)
Gene ID: HRGMv2_2326_2_8
Type: TC
Location: 6323 - 8308 (-)
Type: TC
Location: 6323 - 8308 (-)
Gene ID: HRGMv2_2326_2_9
Type: TC
Location: 8831 - 10174 (-)
Type: TC
Location: 8831 - 10174 (-)
Gene ID: HRGMv2_2326_2_10
Type: pfam
Location: 10755 - 12275 (-)
Type: pfam
Location: 10755 - 12275 (-)
Gene ID: HRGMv2_2326_2_11
Type: CAZyme
Location: 12337 - 14364 (-)
Type: CAZyme
Location: 12337 - 14364 (-)
Gene ID: HRGMv2_2326_2_12
Type: CAZyme
Location: 14543 - 17581 (-)
Type: CAZyme
Location: 14543 - 17581 (-)
Gene ID: HRGMv2_2326_2_13
Type: TC
Location: 17653 - 18459 (-)
Type: TC
Location: 17653 - 18459 (-)
Gene ID: HRGMv2_2326_2_14
Type: TC
Location: 18456 - 19340 (-)
Type: TC
Location: 18456 - 19340 (-)
Gene ID: HRGMv2_2326_2_15
Type: TC
Location: 19450 - 20814 (-)
Type: TC
Location: 19450 - 20814 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Oliverpabstia
Species
Oliverpabstia sp000432335
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2326_2_5 | vegan > omnivore | 1.32338 | 0.01438 |
| HRGMv2_2326_2_5 | vegetarian > omnivore | 1.16677 | 0.03783 |