Genome Details
Selected Rep_genome_ID: HRGMv2_2105
Total Genomes Found: 10
Total Genomes Found: 10
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C97.CMAG_2 | 2,719,652 | 98.66% | 0% | China(Inner Mongolia) | Asia | IMGG |
| CGMR039022 | 2,736,893 | 99.33% | 0% | China | Asia | CGMR |
| HRGMv2_2105 | 3,062,614 | 99.32% | 0% | South Korea | Asia | HRGM |
| MGYG000000562 | 2,986,625 | 99.33% | 0% | China | Asia | UHGG |
| Rep_2363 | 2,552,082 | 98.6577% | 0% | NA | NA | WIS |
| ShaoY_2019_ERR3406032_bin.10 | 2,928,928 | 99.32% | 0% | UK | Europe | ELGG |
| SPMP09_bin.32 | 2,789,410 | 91.28% | 0.67% | Singapore | Asia | SPMP |
| SPMP56_bin.34 | 2,517,503 | 92.92% | 0.34% | Singapore | Asia | SPMP |
| SPMP64_bin.17 | 2,674,258 | 92.84% | 0.67% | Singapore | Asia | SPMP |
| SW064_maxbin.012 | 2,835,211 | 99.33% | 0% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_2105_CGC17 | CGCFAM_00002 | Yes | 9 | 5 | |
| HRGMv2_2105_CGC26 | CGCFAM_00054 | Yes | 3 | 1 | |
| HRGMv2_2105_CGC18 | CGCFAM_00070 | Yes | 5 | 2 | |
| HRGMv2_2105_CGC30 | CGCFAM_00460 | Yes | 4 | 1 | |
| HRGMv2_2105_CGC23 | CGCFAM_00905 | Yes | 12 | 3 | |
| HRGMv2_2105_CGC24 | CGCFAM_01010 | Yes | 4 | 1 | |
| HRGMv2_2105_CGC7 | CGCFAM_01198 | Yes | 7 | 1 | |
| HRGMv2_2105_CGC32 | CGCFAM_01402 | Yes | 4 | 1 | |
| HRGMv2_2105_CGC1 | CGCFAM_02080 | Yes | 5 | 1 | |
| HRGMv2_2105_CGC10 | CGCFAM_03226 | Yes | 3 | 1 | |
| HRGMv2_2105_CGC15 | CGCFAM_05202 | Yes | 9 | 5 | |
| HRGMv2_2105_CGC5 | CGCFAM_06095 | Yes | 3 | 1 | |
| HRGMv2_2105_CGC22 | CGCFAM_08277 | Yes | 8 | 1 |
Top CAZyme Families