Cluster: HRGMv2_2105_CGC1
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_02080
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_145 | 146909 | 147787 | - | 1.A.23.2.1 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_146 | 147864 | 150281 | - | CBM48 | GH13_9 |
| peptidase | HRGMv2_2105_1 | HRGMv2_2105_1_147 | 150443 | 151288 | - | S09.UPW |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_148 | 151441 | 152673 | - | DUF1015 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_149 | 152709 | 154199 | - | 1.B.52.2.1 |
Gene ID: HRGMv2_2105_1_145
Type: TC
Location: 146909 - 147787 (-)
Type: TC
Location: 146909 - 147787 (-)
Gene ID: HRGMv2_2105_1_146
Type: CAZyme
Location: 147864 - 150281 (-)
Type: CAZyme
Location: 147864 - 150281 (-)
Gene ID: HRGMv2_2105_1_147
Type: peptidase
Location: 150443 - 151288 (-)
Type: peptidase
Location: 150443 - 151288 (-)
Gene ID: HRGMv2_2105_1_148
Type: pfam
Location: 151441 - 152673 (-)
Type: pfam
Location: 151441 - 152673 (-)
Gene ID: HRGMv2_2105_1_149
Type: TC
Location: 152709 - 154199 (-)
Type: TC
Location: 152709 - 154199 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_145 | vegetarian > vegan | 1.95288 | 0.01276 |
| HRGMv2_2105_1_146 | vegetarian > vegan | 1.48156 | 0.01276 |
| HRGMv2_2105_1_147 | vegetarian > vegan | 1.03919 | 0.01276 |
| HRGMv2_2105_1_149 | vegetarian > vegan | 1.22795 | 0.01276 |