Cluster: HRGMv2_2105_CGC10
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_03226
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_768 | 849521 | 851227 | - | GH18 |
| NULL(UNKNOWN) | HRGMv2_2105_1 | HRGMv2_2105_1_769 | 851479 | 852138 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_770 | 852092 | 853543 | - | 1.I.1.1.3 |
Gene ID: HRGMv2_2105_1_768
Type: CAZyme
Location: 849521 - 851227 (-)
Type: CAZyme
Location: 849521 - 851227 (-)
Gene ID: HRGMv2_2105_1_769
Type:
Location: 851479 - 852138 (-)
Type:
Location: 851479 - 852138 (-)
Gene ID: HRGMv2_2105_1_770
Type: TC
Location: 852092 - 853543 (-)
Type: TC
Location: 852092 - 853543 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_768 | vegetarian > vegan | 1.21301 | 0.01276 |
| HRGMv2_2105_1_769 | vegetarian > vegan | 1.79978 | 0.01276 |
| HRGMv2_2105_1_770 | vegetarian > vegan | 1.80951 | 0.01276 |