Cluster: HRGMv2_2105_CGC7
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_01198
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_501 | 556312 | 557943 | - | GH77 |
| STP | HRGMv2_2105_1 | HRGMv2_2105_1_502 | 557979 | 558446 | - | CheW |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_503 | 558526 | 559644 | - | RF-1 | PCRF |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_504 | 559668 | 562235 | - | 3.A.5.1.3 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_505 | 562501 | 563031 | - | Ribosomal_S30AE | Ribosom_S30AE_C |
| sulfatase | HRGMv2_2105_1 | HRGMv2_2105_1_506 | 563710 | 564438 | + | S1_6 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_507 | 564440 | 565609 | - | 2.A.4.7.4 |
Gene ID: HRGMv2_2105_1_501
Type: CAZyme
Location: 556312 - 557943 (-)
Type: CAZyme
Location: 556312 - 557943 (-)
Gene ID: HRGMv2_2105_1_502
Type: STP
Location: 557979 - 558446 (-)
Type: STP
Location: 557979 - 558446 (-)
Gene ID: HRGMv2_2105_1_503
Type: pfam
Location: 558526 - 559644 (-)
Type: pfam
Location: 558526 - 559644 (-)
Gene ID: HRGMv2_2105_1_504
Type: TC
Location: 559668 - 562235 (-)
Type: TC
Location: 559668 - 562235 (-)
Gene ID: HRGMv2_2105_1_505
Type: pfam
Location: 562501 - 563031 (-)
Type: pfam
Location: 562501 - 563031 (-)
Gene ID: HRGMv2_2105_1_506
Type: sulfatase
Location: 563710 - 564438 (+)
Type: sulfatase
Location: 563710 - 564438 (+)
Gene ID: HRGMv2_2105_1_507
Type: TC
Location: 564440 - 565609 (-)
Type: TC
Location: 564440 - 565609 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.