Cluster: HRGMv2_2105_CGC23
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_00905
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1570 | 1715004 | 1715555 | + | 9.A.11.1.1 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1571 | 1715587 | 1716603 | + | 9.A.11.1.1 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_1572 | 1716600 | 1716962 | + | SpoVAC_SpoVAEB |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1573 | 1717201 | 1719969 | - | GT51 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_1574 | 1720138 | 1720782 | + | UPF0029 | DUF1949 |
| STP | HRGMv2_2105_1 | HRGMv2_2105_1_1575 | 1721166 | 1722758 | + | SBP_bac_1 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1576 | 1722916 | 1724385 | + | 3.A.1.1.29 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1577 | 1724398 | 1725264 | + | 3.A.1.1.29 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1578 | 1725467 | 1727425 | + | CBM91 | GH43_12 |
| NULL(UNKNOWN) | HRGMv2_2105_1 | HRGMv2_2105_1_1579 | 1727439 | 1728392 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1580 | 1728383 | 1729939 | + | GH28 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1581 | 1729948 | 1731738 | + | 3.A.1.106.2 |
Gene ID: HRGMv2_2105_1_1570
Type: TC
Location: 1715004 - 1715555 (+)
Type: TC
Location: 1715004 - 1715555 (+)
Gene ID: HRGMv2_2105_1_1571
Type: TC
Location: 1715587 - 1716603 (+)
Type: TC
Location: 1715587 - 1716603 (+)
Gene ID: HRGMv2_2105_1_1572
Type: pfam
Location: 1716600 - 1716962 (+)
Type: pfam
Location: 1716600 - 1716962 (+)
Gene ID: HRGMv2_2105_1_1573
Type: CAZyme
Location: 1717201 - 1719969 (-)
Type: CAZyme
Location: 1717201 - 1719969 (-)
Gene ID: HRGMv2_2105_1_1574
Type: pfam
Location: 1720138 - 1720782 (+)
Type: pfam
Location: 1720138 - 1720782 (+)
Gene ID: HRGMv2_2105_1_1575
Type: STP
Location: 1721166 - 1722758 (+)
Type: STP
Location: 1721166 - 1722758 (+)
Gene ID: HRGMv2_2105_1_1576
Type: TC
Location: 1722916 - 1724385 (+)
Type: TC
Location: 1722916 - 1724385 (+)
Gene ID: HRGMv2_2105_1_1577
Type: TC
Location: 1724398 - 1725264 (+)
Type: TC
Location: 1724398 - 1725264 (+)
Gene ID: HRGMv2_2105_1_1578
Type: CAZyme
Location: 1725467 - 1727425 (+)
Type: CAZyme
Location: 1725467 - 1727425 (+)
Gene ID: HRGMv2_2105_1_1579
Type:
Location: 1727439 - 1728392 (+)
Type:
Location: 1727439 - 1728392 (+)
Gene ID: HRGMv2_2105_1_1580
Type: CAZyme
Location: 1728383 - 1729939 (+)
Type: CAZyme
Location: 1728383 - 1729939 (+)
Gene ID: HRGMv2_2105_1_1581
Type: TC
Location: 1729948 - 1731738 (+)
Type: TC
Location: 1729948 - 1731738 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1571 | vegetarian > vegan | 1.52217 | 0.01276 |
| HRGMv2_2105_1_1572 | vegetarian > vegan | 1.96411 | 0.01276 |
| HRGMv2_2105_1_1574 | vegetarian > vegan | 1.17492 | 0.01276 |
| HRGMv2_2105_1_1576 | vegan > omnivore | 1.21288 | 0.04093 |
| HRGMv2_2105_1_1578 | vegetarian > vegan | 1.09860 | 0.01276 |
| HRGMv2_2105_1_1579 | vegetarian > vegan | 1.13306 | 0.01276 |