Cluster: HRGMv2_2105_CGC26
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_00054
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1804 | 2004141 | 2005505 | + | 2.A.2.1.1 |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1805 | 2005538 | 2007922 | + | GH36 |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1806 | 2008318 | 2009649 | + | 1.A.26.1.2 |
Gene ID: HRGMv2_2105_1_1804
Type: TC
Location: 2004141 - 2005505 (+)
Type: TC
Location: 2004141 - 2005505 (+)
Gene ID: HRGMv2_2105_1_1805
Type: CAZyme
Location: 2005538 - 2007922 (+)
Type: CAZyme
Location: 2005538 - 2007922 (+)
Gene ID: HRGMv2_2105_1_1806
Type: TC
Location: 2008318 - 2009649 (+)
Type: TC
Location: 2008318 - 2009649 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1805 | vegetarian > vegan | 1.60117 | 0.01276 |
| HRGMv2_2105_1_1806 | vegetarian > vegan | 1.36875 | 0.01276 |