Cluster: HRGMv2_2105_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_01010
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1631 | 1788123 | 1789139 | + | GT2 |
| sulfatase | HRGMv2_2105_1 | HRGMv2_2105_1_1632 | 1789151 | 1789912 | + | S1_2 |
| NULL(UNKNOWN) | HRGMv2_2105_1 | HRGMv2_2105_1_1633 | 1790044 | 1790565 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1634 | 1790745 | 1792901 | + | 9.B.34.1.3 |
Gene ID: HRGMv2_2105_1_1631
Type: CAZyme
Location: 1788123 - 1789139 (+)
Type: CAZyme
Location: 1788123 - 1789139 (+)
Gene ID: HRGMv2_2105_1_1632
Type: sulfatase
Location: 1789151 - 1789912 (+)
Type: sulfatase
Location: 1789151 - 1789912 (+)
Gene ID: HRGMv2_2105_1_1633
Type:
Location: 1790044 - 1790565 (-)
Type:
Location: 1790044 - 1790565 (-)
Gene ID: HRGMv2_2105_1_1634
Type: TC
Location: 1790745 - 1792901 (+)
Type: TC
Location: 1790745 - 1792901 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1633 | vegetarian > vegan | 1.77013 | 0.01276 |
| HRGMv2_2105_1_1634 | vegetarian > vegan | 1.82101 | 0.01276 |