Cluster: HRGMv2_2105_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_00070
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1131 | 1270780 | 1271955 | + | GT76 |
| NULL(UNKNOWN) | HRGMv2_2105_1 | HRGMv2_2105_1_1132 | 1271990 | 1273156 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_1133 | 1273268 | 1274008 | + | GT2 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_1134 | 1274531 | 1274956 | - | GtrA_DPMS_TM |
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_1135 | 1275153 | 1276667 | + | 2.A.50.2.1 |
Gene ID: HRGMv2_2105_1_1131
Type: CAZyme
Location: 1270780 - 1271955 (+)
Type: CAZyme
Location: 1270780 - 1271955 (+)
Gene ID: HRGMv2_2105_1_1132
Type:
Location: 1271990 - 1273156 (+)
Type:
Location: 1271990 - 1273156 (+)
Gene ID: HRGMv2_2105_1_1133
Type: CAZyme
Location: 1273268 - 1274008 (+)
Type: CAZyme
Location: 1273268 - 1274008 (+)
Gene ID: HRGMv2_2105_1_1134
Type: pfam
Location: 1274531 - 1274956 (-)
Type: pfam
Location: 1274531 - 1274956 (-)
Gene ID: HRGMv2_2105_1_1135
Type: TC
Location: 1275153 - 1276667 (+)
Type: TC
Location: 1275153 - 1276667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_1133 | vegan > omnivore | 1.18202 | 0.03344 |