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Cluster: HRGMv2_2105_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_2105_1 HRGMv2_2105_1_1483 1630156 1631910 + 3.A.1.21.1
TC HRGMv2_2105_1 HRGMv2_2105_1_1484 1631912 1633651 + 3.A.1.21.1
TC HRGMv2_2105_1 HRGMv2_2105_1_1485 1633694 1634281 + 3.A.1.31.2
TC HRGMv2_2105_1 HRGMv2_2105_1_1486 1634281 1634997 + 3.A.1.31.2
TC HRGMv2_2105_1 HRGMv2_2105_1_1487 1635066 1636487 + 3.A.1.31.2
TF HRGMv2_2105_1 HRGMv2_2105_1_1488 1637259 1638116 - HTH_AraC | HTH_AraC
TC HRGMv2_2105_1 HRGMv2_2105_1_1489 1638333 1639703 + 2.A.2.3.6
CAZyme HRGMv2_2105_1 HRGMv2_2105_1_1490 1639769 1641670 + GH2
Gene ID: HRGMv2_2105_1_1483
Type: TC
Location: 1630156 - 1631910 (+)
Gene ID: HRGMv2_2105_1_1484
Type: TC
Location: 1631912 - 1633651 (+)
Gene ID: HRGMv2_2105_1_1485
Type: TC
Location: 1633694 - 1634281 (+)
Gene ID: HRGMv2_2105_1_1486
Type: TC
Location: 1634281 - 1634997 (+)
Gene ID: HRGMv2_2105_1_1487
Type: TC
Location: 1635066 - 1636487 (+)
Gene ID: HRGMv2_2105_1_1488
Type: TF
Location: 1637259 - 1638116 (-)
Gene ID: HRGMv2_2105_1_1489
Type: TC
Location: 1638333 - 1639703 (+)
Gene ID: HRGMv2_2105_1_1490
Type: CAZyme
Location: 1639769 - 1641670 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2105_1_1485 vegetarian > vegan 1.21644 0.01276
HRGMv2_2105_1_1486 vegetarian > vegan 1.03690 0.01276
HRGMv2_2105_1_1487 vegetarian > vegan 1.08878 0.01276

🧭 Explore Read Mapping of CGC

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