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Cluster: HRGMv2_2105_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_2105_1 HRGMv2_2105_1_1068 1199180 1199977 + GT2
CAZyme HRGMv2_2105_1 HRGMv2_2105_1_1069 1199983 1201152 + GT4
CAZyme HRGMv2_2105_1 HRGMv2_2105_1_1070 1201155 1202093 + GT2
TC HRGMv2_2105_1 HRGMv2_2105_1_1071 1202230 1203009 + 3.A.1.103.4
TC HRGMv2_2105_1 HRGMv2_2105_1_1072 1203009 1204271 + 3.A.1.103.1
pfam HRGMv2_2105_1 HRGMv2_2105_1_1073 1204450 1205547 + GLF | NAD_binding_8
CAZyme HRGMv2_2105_1 HRGMv2_2105_1_1074 1205617 1207482 + GT2
pfam HRGMv2_2105_1 HRGMv2_2105_1_1075 1207509 1209269 + NosD | NosD | Beta_helix | Beta_helix | Beta_helix
CAZyme HRGMv2_2105_1 HRGMv2_2105_1_1076 1209326 1210900 + GH25
Gene ID: HRGMv2_2105_1_1068
Type: CAZyme
Location: 1199180 - 1199977 (+)
Gene ID: HRGMv2_2105_1_1069
Type: CAZyme
Location: 1199983 - 1201152 (+)
Gene ID: HRGMv2_2105_1_1070
Type: CAZyme
Location: 1201155 - 1202093 (+)
Gene ID: HRGMv2_2105_1_1071
Type: TC
Location: 1202230 - 1203009 (+)
Gene ID: HRGMv2_2105_1_1072
Type: TC
Location: 1203009 - 1204271 (+)
Gene ID: HRGMv2_2105_1_1073
Type: pfam
Location: 1204450 - 1205547 (+)
Gene ID: HRGMv2_2105_1_1074
Type: CAZyme
Location: 1205617 - 1207482 (+)
Gene ID: HRGMv2_2105_1_1075
Type: pfam
Location: 1207509 - 1209269 (+)
Gene ID: HRGMv2_2105_1_1076
Type: CAZyme
Location: 1209326 - 1210900 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_2105_1_1068 vegetarian > vegan 1.30996 0.01276
HRGMv2_2105_1_1070 vegetarian > vegan 1.17282 0.01276

🧭 Explore Read Mapping of CGC

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