Cluster: HRGMv2_2105_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_2105
- CGC Family ID: CGCFAM_00460
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_2105_1 | HRGMv2_2105_1_2030 | 2267364 | 2269973 | + | 3.A.9.1.2 |
| pfam | HRGMv2_2105_1 | HRGMv2_2105_1_2031 | 2270069 | 2270254 | - | DUF4250 |
| NULL(UNKNOWN) | HRGMv2_2105_1 | HRGMv2_2105_1_2032 | 2270421 | 2273183 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_2105_1 | HRGMv2_2105_1_2033 | 2273198 | 2274304 | + | GT111 |
Gene ID: HRGMv2_2105_1_2030
Type: TC
Location: 2267364 - 2269973 (+)
Type: TC
Location: 2267364 - 2269973 (+)
Gene ID: HRGMv2_2105_1_2031
Type: pfam
Location: 2270069 - 2270254 (-)
Type: pfam
Location: 2270069 - 2270254 (-)
Gene ID: HRGMv2_2105_1_2032
Type:
Location: 2270421 - 2273183 (+)
Type:
Location: 2270421 - 2273183 (+)
Gene ID: HRGMv2_2105_1_2033
Type: CAZyme
Location: 2273198 - 2274304 (+)
Type: CAZyme
Location: 2273198 - 2274304 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp000437735
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_2105_1_2031 | vegetarian > vegan | 2.08073 | 0.01276 |
| HRGMv2_2105_1_2033 | vegetarian > vegan | 1.08019 | 0.01276 |