Genome Details
Selected Rep_genome_ID: HRGMv2_0148
Total Genomes Found: 3
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| CGMR067107 | 2,830,618 | 91.19% | 0.07% | China | Asia | CGMR |
| GH038_bin.12 | 3,164,075 | 95.77% | 0.76% | NA | Africa | H3AfricaPhase2 |
| HRGMv2_0148 | 3,807,567 | 99.25% | 0% | Japan | Asia | HRGM |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0148_CGC35 | CGCFAM_02388 | Yes | 7 | 1 | |
| HRGMv2_0148_CGC42 | CGCFAM_02414 | Yes | 4 | 1 | |
| HRGMv2_0148_CGC1 | CGCFAM_02837 | Yes | 4 | 1 | |
| HRGMv2_0148_CGC33 | CGCFAM_02863 | Yes | 14 | 2 | |
| HRGMv2_0148_CGC46 | CGCFAM_02864 | Yes | 14 | 6 | |
| HRGMv2_0148_CGC58 | CGCFAM_03975 | Yes | 10 | 5 | |
| HRGMv2_0148_CGC59 | CGCFAM_03976 | Yes | 12 | 1 | |
| HRGMv2_0148_CGC7 | CGCFAM_04271 | Yes | 4 | 1 | |
| HRGMv2_0148_CGC56 | CGCFAM_04649 | Yes | 3 | 2 | |
| HRGMv2_0148_CGC12 | CGCFAM_05491 | Yes | 8 | 3 | |
| HRGMv2_0148_CGC47 | CGCFAM_05941 | Yes | 10 | 2 | |
| HRGMv2_0148_CGC57 | CGCFAM_05942 | Yes | 10 | 4 | |
| PUL0225_HRGMv2_0148_C0 | CGCFAM_06459 | Yes | 32 | 12 | galactan |
| HRGMv2_0148_CGC30 | CGCFAM_07592 | Yes | 10 | 5 | |
| HRGMv2_0148_CGC2 | CGCFAM_07847 | Yes | 3 | 2 | |
| HRGMv2_0148_CGC40 | CGCFAM_09268 | Yes | 6 | 1 | |
| HRGMv2_0148_CGC10 | CGCFAM_09504 | Yes | 7 | 1 | |
| HRGMv2_0148_CGC54 | CGCFAM_09505 | Yes | 15 | 8 | |
| HRGMv2_0148_CGC55 | CGCFAM_09506 | Yes | 3 | 1 |
Top CAZyme Families