Cluster: HRGMv2_0148_CGC40
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_09268
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0148_108 | HRGMv2_0148_108_28 | 35487 | 37232 | - | 8.A.46.1.6 |
| TC | HRGMv2_0148_108 | HRGMv2_0148_108_29 | 37246 | 40446 | - | 1.B.14.6.1 |
| TF | HRGMv2_0148_108 | HRGMv2_0148_108_30 | 40490 | 41008 | - | GerE |
| TF | HRGMv2_0148_108 | HRGMv2_0148_108_31 | 41230 | 44190 | - | HTH_AraC |
| CAZyme | HRGMv2_0148_108 | HRGMv2_0148_108_32 | 44433 | 47168 | - | PL40 |
| TC | HRGMv2_0148_108 | HRGMv2_0148_108_33 | 47462 | 49207 | + | 2.A.21.3.19 |
Gene ID: HRGMv2_0148_108_28
Type: TC
Location: 35487 - 37232 (-)
Type: TC
Location: 35487 - 37232 (-)
Gene ID: HRGMv2_0148_108_29
Type: TC
Location: 37246 - 40446 (-)
Type: TC
Location: 37246 - 40446 (-)
Gene ID: HRGMv2_0148_108_30
Type: TF
Location: 40490 - 41008 (-)
Type: TF
Location: 40490 - 41008 (-)
Gene ID: HRGMv2_0148_108_31
Type: TF
Location: 41230 - 44190 (-)
Type: TF
Location: 41230 - 44190 (-)
Gene ID: HRGMv2_0148_108_32
Type: CAZyme
Location: 44433 - 47168 (-)
Type: CAZyme
Location: 44433 - 47168 (-)
Gene ID: HRGMv2_0148_108_33
Type: TC
Location: 47462 - 49207 (+)
Type: TC
Location: 47462 - 49207 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.