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Genome Details

Selected Rep_genome_ID: HRGMv2_0148
Total Genomes Found: 3
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola plebeius
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
CGMR067107 2,830,618 91.19% 0.07% China Asia CGMR
GH038_bin.12 3,164,075 95.77% 0.76% NA Africa H3AfricaPhase2
HRGMv2_0148 3,807,567 99.25% 0% Japan Asia HRGM
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0148_CGC17 CGCFAM_00001 Yes 5 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0148_CGC38 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0148_CGC43 CGCFAM_00017 Yes 7 3 fructan
HRGMv2_0148_CGC32 CGCFAM_00031 Yes 8 3 pectin/galactan
HRGMv2_0148_CGC29 - Yes 10 4 N/A
HRGMv2_0148_CGC34 CGCFAM_00065 Yes 4 2
HRGMv2_0148_CGC9 CGCFAM_00129 Yes 5 3 beta-mannan
HRGMv2_0148_CGC21 CGCFAM_00164 Yes 8 4
HRGMv2_0148_CGC26 CGCFAM_00225 Yes 7 3 arabinogalactan
HRGMv2_0148_CGC25 CGCFAM_00229 Yes 6 1
HRGMv2_0148_CGC50 CGCFAM_00304 Yes 5 1
HRGMv2_0148_CGC20 CGCFAM_00542 Yes 8 5
HRGMv2_0148_CGC6 CGCFAM_00582 Yes 11 6 arabinogalactan
HRGMv2_0148_CGC13 CGCFAM_00599 Yes 3 1
HRGMv2_0148_CGC8 CGCFAM_00647 Yes 7 2
HRGMv2_0148_CGC14 CGCFAM_00755 Yes 7 1
PUL0101_HRGMv2_0148_C1 CGCFAM_01071 Yes 18 3 host glycan
HRGMv2_0148_CGC37 CGCFAM_01122 Yes 6 3
HRGMv2_0148_CGC22 CGCFAM_01220 Yes 7 1
HRGMv2_0148_CGC51 CGCFAM_01308 Yes 7 1
HRGMv2_0148_CGC27 CGCFAM_01491 Yes 12 4
HRGMv2_0148_CGC4 CGCFAM_01743 Yes 13 4
HRGMv2_0148_CGC3 CGCFAM_01826 Yes 5 3
HRGMv2_0148_CGC5 CGCFAM_01889 Yes 4 2
HRGMv2_0148_CGC19 CGCFAM_02066 Yes 4 1
Top CAZyme Families