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Cluster: HRGMv2_0148_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_0148_110 HRGMv2_0148_110_19 21206 24319 + 1.B.14.6.1
pfam HRGMv2_0148_110 HRGMv2_0148_110_20 24338 26074 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0148_110 HRGMv2_0148_110_21 26160 27965 + GH32
NULL(UNKNOWN) HRGMv2_0148_110 HRGMv2_0148_110_22 28131 30479 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_0148_110 HRGMv2_0148_110_23 30607 32478 + GH32
CAZyme HRGMv2_0148_110 HRGMv2_0148_110_24 32502 34694 + GH36
TC HRGMv2_0148_110 HRGMv2_0148_110_25 34754 35914 + 2.A.1.7.17
Gene ID: HRGMv2_0148_110_19
Type: TC
Location: 21206 - 24319 (+)
Gene ID: HRGMv2_0148_110_20
Type: pfam
Location: 24338 - 26074 (+)
Gene ID: HRGMv2_0148_110_21
Type: CAZyme
Location: 26160 - 27965 (+)
Gene ID: HRGMv2_0148_110_22
Type:
Location: 28131 - 30479 (+)
Gene ID: HRGMv2_0148_110_23
Type: CAZyme
Location: 30607 - 32478 (+)
Gene ID: HRGMv2_0148_110_24
Type: CAZyme
Location: 32502 - 34694 (+)
Gene ID: HRGMv2_0148_110_25
Type: TC
Location: 34754 - 35914 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0148_110_22 vegetarian > vegan 1.38790 0.03872

🧭 Explore Read Mapping of CGC

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