Cluster: HRGMv2_0148_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_01743
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0148_3 | HRGMv2_0148_3_55 | 62481 | 63662 | + | 2.A.1.2.14 |
| TF | HRGMv2_0148_3 | HRGMv2_0148_3_56 | 63672 | 67805 | + | HTH_AraC |
| CAZyme | HRGMv2_0148_3 | HRGMv2_0148_3_57 | 67897 | 69297 | - | GH28 |
| CAZyme | HRGMv2_0148_3 | HRGMv2_0148_3_58 | 69322 | 71649 | - | GH92 |
| pfam | HRGMv2_0148_3 | HRGMv2_0148_3_59 | 71807 | 73450 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0148_3 | HRGMv2_0148_3_60 | 73475 | 76465 | - | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_0148_3 | HRGMv2_0148_3_61 | 76496 | 77563 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0148_3 | HRGMv2_0148_3_62 | 77592 | 78227 | - | NAGLU_C |
| CAZyme | HRGMv2_0148_3 | HRGMv2_0148_3_63 | 78297 | 79760 | - | GH89 |
| TC | HRGMv2_0148_3 | HRGMv2_0148_3_64 | 79938 | 81287 | + | 2.A.66.1.45 |
| pfam | HRGMv2_0148_3 | HRGMv2_0148_3_65 | 81377 | 82150 | - | Shikimate_DH | NAD_binding_2 | F420_oxidored | P5CR_dimer |
| NULL(UNKNOWN) | HRGMv2_0148_3 | HRGMv2_0148_3_66 | 82576 | 82869 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0148_3 | HRGMv2_0148_3_67 | 82955 | 85162 | - | GH36 |
Gene ID: HRGMv2_0148_3_55
Type: TC
Location: 62481 - 63662 (+)
Type: TC
Location: 62481 - 63662 (+)
Gene ID: HRGMv2_0148_3_56
Type: TF
Location: 63672 - 67805 (+)
Type: TF
Location: 63672 - 67805 (+)
Gene ID: HRGMv2_0148_3_57
Type: CAZyme
Location: 67897 - 69297 (-)
Type: CAZyme
Location: 67897 - 69297 (-)
Gene ID: HRGMv2_0148_3_58
Type: CAZyme
Location: 69322 - 71649 (-)
Type: CAZyme
Location: 69322 - 71649 (-)
Gene ID: HRGMv2_0148_3_59
Type: pfam
Location: 71807 - 73450 (-)
Type: pfam
Location: 71807 - 73450 (-)
Gene ID: HRGMv2_0148_3_60
Type: TC
Location: 73475 - 76465 (-)
Type: TC
Location: 73475 - 76465 (-)
Gene ID: HRGMv2_0148_3_61
Type:
Location: 76496 - 77563 (-)
Type:
Location: 76496 - 77563 (-)
Gene ID: HRGMv2_0148_3_62
Type: pfam
Location: 77592 - 78227 (-)
Type: pfam
Location: 77592 - 78227 (-)
Gene ID: HRGMv2_0148_3_63
Type: CAZyme
Location: 78297 - 79760 (-)
Type: CAZyme
Location: 78297 - 79760 (-)
Gene ID: HRGMv2_0148_3_64
Type: TC
Location: 79938 - 81287 (+)
Type: TC
Location: 79938 - 81287 (+)
Gene ID: HRGMv2_0148_3_65
Type: pfam
Location: 81377 - 82150 (-)
Type: pfam
Location: 81377 - 82150 (-)
Gene ID: HRGMv2_0148_3_66
Type:
Location: 82576 - 82869 (+)
Type:
Location: 82576 - 82869 (+)
Gene ID: HRGMv2_0148_3_67
Type: CAZyme
Location: 82955 - 85162 (-)
Type: CAZyme
Location: 82955 - 85162 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.