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Cluster: HRGMv2_0148_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0148_8 HRGMv2_0148_8_25 27996 29273 + PL42
CAZyme HRGMv2_0148_8 HRGMv2_0148_8_26 29289 31598 + GH105 | GH154
NULL(UNKNOWN) HRGMv2_0148_8 HRGMv2_0148_8_27 31595 31729 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0148_8 HRGMv2_0148_8_28 31996 35121 + 1.B.14.6.1
pfam HRGMv2_0148_8 HRGMv2_0148_8_29 35136 37025 + SusD_RagB | SusD-like_3
TC HRGMv2_0148_8 HRGMv2_0148_8_30 37058 40075 + 1.B.14.6.1
pfam HRGMv2_0148_8 HRGMv2_0148_8_31 40107 41789 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_0148_8 HRGMv2_0148_8_32 41823 42704 + CBM32
CAZyme HRGMv2_0148_8 HRGMv2_0148_8_33 42737 44146 + GH16_3
CAZyme HRGMv2_0148_8 HRGMv2_0148_8_34 44182 45063 + GH16_3
CAZyme HRGMv2_0148_8 HRGMv2_0148_8_35 45071 46222 + GH43_24
Gene ID: HRGMv2_0148_8_25
Type: CAZyme
Location: 27996 - 29273 (+)
Gene ID: HRGMv2_0148_8_26
Type: CAZyme
Location: 29289 - 31598 (+)
Gene ID: HRGMv2_0148_8_27
Type:
Location: 31595 - 31729 (-)
Gene ID: HRGMv2_0148_8_28
Type: TC
Location: 31996 - 35121 (+)
Gene ID: HRGMv2_0148_8_29
Type: pfam
Location: 35136 - 37025 (+)
Gene ID: HRGMv2_0148_8_30
Type: TC
Location: 37058 - 40075 (+)
Gene ID: HRGMv2_0148_8_31
Type: pfam
Location: 40107 - 41789 (+)
Gene ID: HRGMv2_0148_8_32
Type: CAZyme
Location: 41823 - 42704 (+)
Gene ID: HRGMv2_0148_8_33
Type: CAZyme
Location: 42737 - 44146 (+)
Gene ID: HRGMv2_0148_8_34
Type: CAZyme
Location: 44182 - 45063 (+)
Gene ID: HRGMv2_0148_8_35
Type: CAZyme
Location: 45071 - 46222 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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