Cluster: HRGMv2_0148_CGC27
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_01491
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0148_72 | HRGMv2_0148_72_1 | 297 | 3449 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0148_72 | HRGMv2_0148_72_2 | 3463 | 5397 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0148_72 | HRGMv2_0148_72_3 | 5411 | 6796 | + | BT_3987-like_N | BT_3987-like_N |
| CAZyme | HRGMv2_0148_72 | HRGMv2_0148_72_4 | 6913 | 9450 | + | CBM32 |
| pfam | HRGMv2_0148_72 | HRGMv2_0148_72_5 | 9525 | 11006 | - | tRNA-synt_1e | DALR_2 | CysS_C |
| CAZyme | HRGMv2_0148_72 | HRGMv2_0148_72_6 | 11104 | 13044 | - | GH97 |
| CAZyme | HRGMv2_0148_72 | HRGMv2_0148_72_7 | 13212 | 14216 | - | GH43_5 |
| CAZyme | HRGMv2_0148_72 | HRGMv2_0148_72_8 | 14305 | 16242 | - | GH43_4 |
| pfam | HRGMv2_0148_72 | HRGMv2_0148_72_9 | 16277 | 18088 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0148_72 | HRGMv2_0148_72_10 | 18102 | 21299 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0148_72 | HRGMv2_0148_72_11 | 21317 | 23131 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0148_72 | HRGMv2_0148_72_12 | 23143 | 26277 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0148_72_1
Type: TC
Location: 297 - 3449 (+)
Type: TC
Location: 297 - 3449 (+)
Gene ID: HRGMv2_0148_72_2
Type: pfam
Location: 3463 - 5397 (+)
Type: pfam
Location: 3463 - 5397 (+)
Gene ID: HRGMv2_0148_72_3
Type: pfam
Location: 5411 - 6796 (+)
Type: pfam
Location: 5411 - 6796 (+)
Gene ID: HRGMv2_0148_72_4
Type: CAZyme
Location: 6913 - 9450 (+)
Type: CAZyme
Location: 6913 - 9450 (+)
Gene ID: HRGMv2_0148_72_5
Type: pfam
Location: 9525 - 11006 (-)
Type: pfam
Location: 9525 - 11006 (-)
Gene ID: HRGMv2_0148_72_6
Type: CAZyme
Location: 11104 - 13044 (-)
Type: CAZyme
Location: 11104 - 13044 (-)
Gene ID: HRGMv2_0148_72_7
Type: CAZyme
Location: 13212 - 14216 (-)
Type: CAZyme
Location: 13212 - 14216 (-)
Gene ID: HRGMv2_0148_72_8
Type: CAZyme
Location: 14305 - 16242 (-)
Type: CAZyme
Location: 14305 - 16242 (-)
Gene ID: HRGMv2_0148_72_9
Type: pfam
Location: 16277 - 18088 (-)
Type: pfam
Location: 16277 - 18088 (-)
Gene ID: HRGMv2_0148_72_10
Type: TC
Location: 18102 - 21299 (-)
Type: TC
Location: 18102 - 21299 (-)
Gene ID: HRGMv2_0148_72_11
Type: pfam
Location: 21317 - 23131 (-)
Type: pfam
Location: 21317 - 23131 (-)
Gene ID: HRGMv2_0148_72_12
Type: TC
Location: 23143 - 26277 (-)
Type: TC
Location: 23143 - 26277 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.