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Cluster: HRGMv2_0148_CGC21

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0148_47 HRGMv2_0148_47_3 736 3735 + GH2
CAZyme HRGMv2_0148_47 HRGMv2_0148_47_4 3809 6247 - GH2
pfam HRGMv2_0148_47 HRGMv2_0148_47_5 6388 9222 + tRNA-synt_1 | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1_2
TC HRGMv2_0148_47 HRGMv2_0148_47_6 9244 10188 + 2.A.115.1.2
CAZyme HRGMv2_0148_47 HRGMv2_0148_47_7 10327 12879 + GH2
CAZyme HRGMv2_0148_47 HRGMv2_0148_47_8 12931 15249 + GH20
sulfatase HRGMv2_0148_47 HRGMv2_0148_47_9 15255 15836 + S1_7
TC HRGMv2_0148_47 HRGMv2_0148_47_10 16021 17739 + 1.B.14.6.1
Gene ID: HRGMv2_0148_47_3
Type: CAZyme
Location: 736 - 3735 (+)
Gene ID: HRGMv2_0148_47_4
Type: CAZyme
Location: 3809 - 6247 (-)
Gene ID: HRGMv2_0148_47_5
Type: pfam
Location: 6388 - 9222 (+)
Gene ID: HRGMv2_0148_47_6
Type: TC
Location: 9244 - 10188 (+)
Gene ID: HRGMv2_0148_47_7
Type: CAZyme
Location: 10327 - 12879 (+)
Gene ID: HRGMv2_0148_47_8
Type: CAZyme
Location: 12931 - 15249 (+)
Gene ID: HRGMv2_0148_47_9
Type: sulfatase
Location: 15255 - 15836 (+)
Gene ID: HRGMv2_0148_47_10
Type: TC
Location: 16021 - 17739 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0148_47_7 vegetarian > vegan 1.28152 0.02650

🧭 Explore Read Mapping of CGC

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