Cluster: HRGMv2_0148_CGC59
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_03976
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0148_141 | HRGMv2_0148_141_16 | 16109 | 18748 | - | 1.B.14.6.14 |
| pfam | HRGMv2_0148_141 | HRGMv2_0148_141_17 | 18959 | 20266 | - | Inos-1-P_synth | NAD_binding_5 |
| STP | HRGMv2_0148_141 | HRGMv2_0148_141_18 | 20488 | 21435 | + | PfkB |
| TC | HRGMv2_0148_141 | HRGMv2_0148_141_19 | 21518 | 22288 | - | 3.A.1.7.2 |
| TC | HRGMv2_0148_141 | HRGMv2_0148_141_20 | 22276 | 23145 | - | 3.A.1.7.1 |
| TC | HRGMv2_0148_141 | HRGMv2_0148_141_21 | 23168 | 24025 | - | 3.A.1.7.1 |
| TC | HRGMv2_0148_141 | HRGMv2_0148_141_22 | 24041 | 25099 | - | 3.A.1.7.1 |
| NULL(UNKNOWN) | HRGMv2_0148_141 | HRGMv2_0148_141_23 | 25147 | 26214 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0148_141 | HRGMv2_0148_141_24 | 26387 | 27925 | - | GH51_1 |
| pfam | HRGMv2_0148_141 | HRGMv2_0148_141_25 | 28135 | 29160 | + | YceG |
| pfam | HRGMv2_0148_141 | HRGMv2_0148_141_26 | 29169 | 29858 | - | TrkA_N |
| TC | HRGMv2_0148_141 | HRGMv2_0148_141_27 | 29862 | 31646 | - | 2.A.38.4.3 |
Gene ID: HRGMv2_0148_141_16
Type: TC
Location: 16109 - 18748 (-)
Type: TC
Location: 16109 - 18748 (-)
Gene ID: HRGMv2_0148_141_17
Type: pfam
Location: 18959 - 20266 (-)
Type: pfam
Location: 18959 - 20266 (-)
Gene ID: HRGMv2_0148_141_18
Type: STP
Location: 20488 - 21435 (+)
Type: STP
Location: 20488 - 21435 (+)
Gene ID: HRGMv2_0148_141_19
Type: TC
Location: 21518 - 22288 (-)
Type: TC
Location: 21518 - 22288 (-)
Gene ID: HRGMv2_0148_141_20
Type: TC
Location: 22276 - 23145 (-)
Type: TC
Location: 22276 - 23145 (-)
Gene ID: HRGMv2_0148_141_21
Type: TC
Location: 23168 - 24025 (-)
Type: TC
Location: 23168 - 24025 (-)
Gene ID: HRGMv2_0148_141_22
Type: TC
Location: 24041 - 25099 (-)
Type: TC
Location: 24041 - 25099 (-)
Gene ID: HRGMv2_0148_141_23
Type:
Location: 25147 - 26214 (-)
Type:
Location: 25147 - 26214 (-)
Gene ID: HRGMv2_0148_141_24
Type: CAZyme
Location: 26387 - 27925 (-)
Type: CAZyme
Location: 26387 - 27925 (-)
Gene ID: HRGMv2_0148_141_25
Type: pfam
Location: 28135 - 29160 (+)
Type: pfam
Location: 28135 - 29160 (+)
Gene ID: HRGMv2_0148_141_26
Type: pfam
Location: 29169 - 29858 (-)
Type: pfam
Location: 29169 - 29858 (-)
Gene ID: HRGMv2_0148_141_27
Type: TC
Location: 29862 - 31646 (-)
Type: TC
Location: 29862 - 31646 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.