Cluster: HRGMv2_0148_CGC33
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_02863
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0148_88 | HRGMv2_0148_88_12 | 11235 | 12935 | + | GH13_38 |
| TC | HRGMv2_0148_88 | HRGMv2_0148_88_13 | 13062 | 14720 | + | 4.C.1.1.4 |
| NULL(UNKNOWN) | HRGMv2_0148_88 | HRGMv2_0148_88_14 | 14732 | 15979 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | HRGMv2_0148_88 | HRGMv2_0148_88_15 | 16015 | 16602 | - | cNMP_binding |
| TC | HRGMv2_0148_88 | HRGMv2_0148_88_16 | 16627 | 17568 | - | 2.A.115.1.1 |
| STP | HRGMv2_0148_88 | HRGMv2_0148_88_17 | 17672 | 18901 | + | Aminotran_1_2 |
| pfam | HRGMv2_0148_88 | HRGMv2_0148_88_18 | 18957 | 21146 | + | Gln-synt_C | GSIII_N | Gln-synt_C-ter |
| TC | HRGMv2_0148_88 | HRGMv2_0148_88_19 | 21308 | 22969 | + | 2.A.81.1.2 |
| pfam | HRGMv2_0148_88 | HRGMv2_0148_88_20 | 22993 | 24990 | + | FBPase_2 |
| CAZyme | HRGMv2_0148_88 | HRGMv2_0148_88_21 | 25145 | 27223 | - | PL11_1 |
| pfam | HRGMv2_0148_88 | HRGMv2_0148_88_22 | 27277 | 29040 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0148_88 | HRGMv2_0148_88_23 | 29059 | 32079 | - | 1.B.14.6.1 |
| pfam | HRGMv2_0148_88 | HRGMv2_0148_88_24 | 32120 | 34108 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0148_88 | HRGMv2_0148_88_25 | 34127 | 37243 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0148_88_12
Type: CAZyme
Location: 11235 - 12935 (+)
Type: CAZyme
Location: 11235 - 12935 (+)
Gene ID: HRGMv2_0148_88_13
Type: TC
Location: 13062 - 14720 (+)
Type: TC
Location: 13062 - 14720 (+)
Gene ID: HRGMv2_0148_88_14
Type:
Location: 14732 - 15979 (+)
Type:
Location: 14732 - 15979 (+)
Gene ID: HRGMv2_0148_88_15
Type: STP
Location: 16015 - 16602 (-)
Type: STP
Location: 16015 - 16602 (-)
Gene ID: HRGMv2_0148_88_16
Type: TC
Location: 16627 - 17568 (-)
Type: TC
Location: 16627 - 17568 (-)
Gene ID: HRGMv2_0148_88_17
Type: STP
Location: 17672 - 18901 (+)
Type: STP
Location: 17672 - 18901 (+)
Gene ID: HRGMv2_0148_88_18
Type: pfam
Location: 18957 - 21146 (+)
Type: pfam
Location: 18957 - 21146 (+)
Gene ID: HRGMv2_0148_88_19
Type: TC
Location: 21308 - 22969 (+)
Type: TC
Location: 21308 - 22969 (+)
Gene ID: HRGMv2_0148_88_20
Type: pfam
Location: 22993 - 24990 (+)
Type: pfam
Location: 22993 - 24990 (+)
Gene ID: HRGMv2_0148_88_21
Type: CAZyme
Location: 25145 - 27223 (-)
Type: CAZyme
Location: 25145 - 27223 (-)
Gene ID: HRGMv2_0148_88_22
Type: pfam
Location: 27277 - 29040 (-)
Type: pfam
Location: 27277 - 29040 (-)
Gene ID: HRGMv2_0148_88_23
Type: TC
Location: 29059 - 32079 (-)
Type: TC
Location: 29059 - 32079 (-)
Gene ID: HRGMv2_0148_88_24
Type: pfam
Location: 32120 - 34108 (-)
Type: pfam
Location: 32120 - 34108 (-)
Gene ID: HRGMv2_0148_88_25
Type: TC
Location: 34127 - 37243 (-)
Type: TC
Location: 34127 - 37243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.