Cluster: HRGMv2_0148_CGC54
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_09505
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_2 | 4575 | 6554 | + | GH51_2 |
| NULL(UNKNOWN) | HRGMv2_0148_129 | HRGMv2_0148_129_3 | 6620 | 6733 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_4 | 7104 | 10451 | - | GH2 |
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_5 | 10618 | 12843 | - | GH92 |
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_6 | 12871 | 15147 | - | GH92 |
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_7 | 15172 | 17388 | - | GH92 |
| TC | HRGMv2_0148_129 | HRGMv2_0148_129_8 | 17539 | 19374 | - | 8.A.46.2.1 |
| TC | HRGMv2_0148_129 | HRGMv2_0148_129_9 | 19397 | 22825 | - | 1.B.14.6.2 |
| STP | HRGMv2_0148_129 | HRGMv2_0148_129_10 | 22977 | 23978 | - | FecR |
| TF | HRGMv2_0148_129 | HRGMv2_0148_129_11 | 23975 | 24535 | - | GerE |
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_12 | 24689 | 26794 | - | GH97 |
| pfam | HRGMv2_0148_129 | HRGMv2_0148_129_13 | 27066 | 27746 | - | Lipase_GDSL_2 |
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_14 | 27769 | 30120 | - | GH115 |
| NULL(UNKNOWN) | HRGMv2_0148_129 | HRGMv2_0148_129_15 | 30490 | 30798 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0148_129 | HRGMv2_0148_129_16 | 30836 | 33304 | + | GH3 |
Gene ID: HRGMv2_0148_129_2
Type: CAZyme
Location: 4575 - 6554 (+)
Type: CAZyme
Location: 4575 - 6554 (+)
Gene ID: HRGMv2_0148_129_3
Type:
Location: 6620 - 6733 (-)
Type:
Location: 6620 - 6733 (-)
Gene ID: HRGMv2_0148_129_4
Type: CAZyme
Location: 7104 - 10451 (-)
Type: CAZyme
Location: 7104 - 10451 (-)
Gene ID: HRGMv2_0148_129_5
Type: CAZyme
Location: 10618 - 12843 (-)
Type: CAZyme
Location: 10618 - 12843 (-)
Gene ID: HRGMv2_0148_129_6
Type: CAZyme
Location: 12871 - 15147 (-)
Type: CAZyme
Location: 12871 - 15147 (-)
Gene ID: HRGMv2_0148_129_7
Type: CAZyme
Location: 15172 - 17388 (-)
Type: CAZyme
Location: 15172 - 17388 (-)
Gene ID: HRGMv2_0148_129_8
Type: TC
Location: 17539 - 19374 (-)
Type: TC
Location: 17539 - 19374 (-)
Gene ID: HRGMv2_0148_129_9
Type: TC
Location: 19397 - 22825 (-)
Type: TC
Location: 19397 - 22825 (-)
Gene ID: HRGMv2_0148_129_10
Type: STP
Location: 22977 - 23978 (-)
Type: STP
Location: 22977 - 23978 (-)
Gene ID: HRGMv2_0148_129_11
Type: TF
Location: 23975 - 24535 (-)
Type: TF
Location: 23975 - 24535 (-)
Gene ID: HRGMv2_0148_129_12
Type: CAZyme
Location: 24689 - 26794 (-)
Type: CAZyme
Location: 24689 - 26794 (-)
Gene ID: HRGMv2_0148_129_13
Type: pfam
Location: 27066 - 27746 (-)
Type: pfam
Location: 27066 - 27746 (-)
Gene ID: HRGMv2_0148_129_14
Type: CAZyme
Location: 27769 - 30120 (-)
Type: CAZyme
Location: 27769 - 30120 (-)
Gene ID: HRGMv2_0148_129_15
Type:
Location: 30490 - 30798 (+)
Type:
Location: 30490 - 30798 (+)
Gene ID: HRGMv2_0148_129_16
Type: CAZyme
Location: 30836 - 33304 (+)
Type: CAZyme
Location: 30836 - 33304 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.