Cluster: HRGMv2_0148_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_09504
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0148_19 | HRGMv2_0148_19_20 | 23586 | 26009 | - | 1.B.14.3.1 |
| pfam | HRGMv2_0148_19 | HRGMv2_0148_19_21 | 26189 | 26971 | - | S6PP | Hydrolase_3 |
| pfam | HRGMv2_0148_19 | HRGMv2_0148_19_22 | 27425 | 28516 | + | AA_kinase | PUA |
| CAZyme | HRGMv2_0148_19 | HRGMv2_0148_19_23 | 28528 | 29664 | - | GH109 |
| NULL(UNKNOWN) | HRGMv2_0148_19 | HRGMv2_0148_19_24 | 29699 | 30088 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | HRGMv2_0148_19 | HRGMv2_0148_19_25 | 30182 | 30736 | + | HTH_3 |
| TC | HRGMv2_0148_19 | HRGMv2_0148_19_26 | 30758 | 32413 | + | 2.A.1.42.2 |
Gene ID: HRGMv2_0148_19_20
Type: TC
Location: 23586 - 26009 (-)
Type: TC
Location: 23586 - 26009 (-)
Gene ID: HRGMv2_0148_19_21
Type: pfam
Location: 26189 - 26971 (-)
Type: pfam
Location: 26189 - 26971 (-)
Gene ID: HRGMv2_0148_19_22
Type: pfam
Location: 27425 - 28516 (+)
Type: pfam
Location: 27425 - 28516 (+)
Gene ID: HRGMv2_0148_19_23
Type: CAZyme
Location: 28528 - 29664 (-)
Type: CAZyme
Location: 28528 - 29664 (-)
Gene ID: HRGMv2_0148_19_24
Type:
Location: 29699 - 30088 (-)
Type:
Location: 29699 - 30088 (-)
Gene ID: HRGMv2_0148_19_25
Type: TF
Location: 30182 - 30736 (+)
Type: TF
Location: 30182 - 30736 (+)
Gene ID: HRGMv2_0148_19_26
Type: TC
Location: 30758 - 32413 (+)
Type: TC
Location: 30758 - 32413 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.