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Cluster: HRGMv2_0148_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0148_135 HRGMv2_0148_135_8 8987 12568 - GH2
CAZyme HRGMv2_0148_135 HRGMv2_0148_135_9 12582 14579 - GH20
CAZyme HRGMv2_0148_135 HRGMv2_0148_135_10 15202 17970 - GH92
pfam HRGMv2_0148_135 HRGMv2_0148_135_11 18005 19231 - DUF218
pfam HRGMv2_0148_135 HRGMv2_0148_135_12 19228 20121 - GDPD | DUF4996
TC HRGMv2_0148_135 HRGMv2_0148_135_13 20142 21707 - 8.A.46.1.2
TC HRGMv2_0148_135 HRGMv2_0148_135_14 21719 24970 - 1.B.14.6.1
pfam HRGMv2_0148_135 HRGMv2_0148_135_15 25297 27339 + tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | Anticodon_3
pfam HRGMv2_0148_135 HRGMv2_0148_135_16 27434 28879 + Polysacc_synt | Polysacc_synt_3
CAZyme HRGMv2_0148_135 HRGMv2_0148_135_17 28898 29362 + GT2
Gene ID: HRGMv2_0148_135_8
Type: CAZyme
Location: 8987 - 12568 (-)
Gene ID: HRGMv2_0148_135_9
Type: CAZyme
Location: 12582 - 14579 (-)
Gene ID: HRGMv2_0148_135_10
Type: CAZyme
Location: 15202 - 17970 (-)
Gene ID: HRGMv2_0148_135_11
Type: pfam
Location: 18005 - 19231 (-)
Gene ID: HRGMv2_0148_135_12
Type: pfam
Location: 19228 - 20121 (-)
Gene ID: HRGMv2_0148_135_13
Type: TC
Location: 20142 - 21707 (-)
Gene ID: HRGMv2_0148_135_14
Type: TC
Location: 21719 - 24970 (-)
Gene ID: HRGMv2_0148_135_15
Type: pfam
Location: 25297 - 27339 (+)
Gene ID: HRGMv2_0148_135_16
Type: pfam
Location: 27434 - 28879 (+)
Gene ID: HRGMv2_0148_135_17
Type: CAZyme
Location: 28898 - 29362 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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