Cluster: PUL0225_HRGMv2_0148_C0
🧬 Cluster Details
- Gene Count: 32
- CAZyme Count: 12
- Substrate: galactan
- Genome ID: HRGMv2_0148
- CGC Family ID: CGCFAM_06459
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_15 | 10927 | 14238 | + | GH2 |
| TC | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_16 | 14476 | 17538 | + | 1.B.14.6.1 |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_17 | 17550 | 19181 | + | SusD_RagB | SusD-like_3 |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_18 | 19285 | 20187 | - | GH16_14 |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_19 | 20483 | 22276 | + | GH29 |
| sulfatase | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_20 | 22281 | 23864 | + | S1_11 |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_21 | 23889 | 25061 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| TF | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_22 | 25326 | 29297 | + | HTH_AraC | HTH_AraC |
| TC | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_23 | 29430 | 32528 | + | 1.B.14.6.1 |
| NULL(UNKNOWN) | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_25 | 34590 | 36314 | + | NULL(UNKNOWN) |
| NULL(UNKNOWN) | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_26 | 36330 | 36884 | + | NULL(UNKNOWN) |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_27 | 36980 | 38803 | + | GH86 |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_28 | 38854 | 41040 | + | GH86 |
| NULL(UNKNOWN) | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_29 | 41046 | 42356 | + | NULL(UNKNOWN) |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_32 | 43363 | 44328 | + | GH16_12 |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_33 | 44375 | 44866 | + | CBM_4_9 |
| NULL(UNKNOWN) | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_34 | 45104 | 45616 | + | NULL(UNKNOWN) |
| NULL(UNKNOWN) | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_35 | 45680 | 47410 | + | NULL(UNKNOWN) |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_36 | 47498 | 49810 | + | GH105 | GH154 |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_37 | 49831 | 51402 | + | GH50 |
| NULL(UNKNOWN) | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_38 | 51446 | 51994 | + | NULL(UNKNOWN) |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_40 | 52424 | 52807 | + | rhaM |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_41 | 52848 | 53780 | + | Aldo_ket_red |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_42 | 53792 | 54715 | + | Amidohydro_2 |
| TC | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_43 | 54712 | 55965 | + | 2.A.1.7.1 |
| sulfatase | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_44 | 56003 | 57019 | + | S1_16 |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_45 | 57049 | 58491 | + | Mannitol_dh | Mannitol_dh_C |
| pfam | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_46 | 58534 | 60021 | + | GD_AH_second | SAF | GD_AH_C |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_47 | 60142 | 62697 | + | GH2 |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_48 | 62769 | 65291 | + | GH2 |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_49 | 65300 | 66508 | + | GH117 | GH117 |
| CAZyme | PUL0225_HRGMv2_0148_C0 | HRGMv2_0148_34_50 | 66535 | 67485 | + | GH16_16 |
Gene ID: HRGMv2_0148_34_15
Type: CAZyme
Location: 10927 - 14238 (+)
Type: CAZyme
Location: 10927 - 14238 (+)
Gene ID: HRGMv2_0148_34_16
Type: TC
Location: 14476 - 17538 (+)
Type: TC
Location: 14476 - 17538 (+)
Gene ID: HRGMv2_0148_34_17
Type: pfam
Location: 17550 - 19181 (+)
Type: pfam
Location: 17550 - 19181 (+)
Gene ID: HRGMv2_0148_34_18
Type: CAZyme
Location: 19285 - 20187 (-)
Type: CAZyme
Location: 19285 - 20187 (-)
Gene ID: HRGMv2_0148_34_19
Type: CAZyme
Location: 20483 - 22276 (+)
Type: CAZyme
Location: 20483 - 22276 (+)
Gene ID: HRGMv2_0148_34_20
Type: sulfatase
Location: 22281 - 23864 (+)
Type: sulfatase
Location: 22281 - 23864 (+)
Gene ID: HRGMv2_0148_34_21
Type: pfam
Location: 23889 - 25061 (+)
Type: pfam
Location: 23889 - 25061 (+)
Gene ID: HRGMv2_0148_34_22
Type: TF
Location: 25326 - 29297 (+)
Type: TF
Location: 25326 - 29297 (+)
Gene ID: HRGMv2_0148_34_23
Type: TC
Location: 29430 - 32528 (+)
Type: TC
Location: 29430 - 32528 (+)
Gene ID: HRGMv2_0148_34_25
Type: null
Location: 34590 - 36314 (+)
Type: null
Location: 34590 - 36314 (+)
Gene ID: HRGMv2_0148_34_26
Type: null
Location: 36330 - 36884 (+)
Type: null
Location: 36330 - 36884 (+)
Gene ID: HRGMv2_0148_34_27
Type: CAZyme
Location: 36980 - 38803 (+)
Type: CAZyme
Location: 36980 - 38803 (+)
Gene ID: HRGMv2_0148_34_28
Type: CAZyme
Location: 38854 - 41040 (+)
Type: CAZyme
Location: 38854 - 41040 (+)
Gene ID: HRGMv2_0148_34_29
Type: null
Location: 41046 - 42356 (+)
Type: null
Location: 41046 - 42356 (+)
Gene ID: HRGMv2_0148_34_32
Type: CAZyme
Location: 43363 - 44328 (+)
Type: CAZyme
Location: 43363 - 44328 (+)
Gene ID: HRGMv2_0148_34_33
Type: pfam
Location: 44375 - 44866 (+)
Type: pfam
Location: 44375 - 44866 (+)
Gene ID: HRGMv2_0148_34_34
Type: null
Location: 45104 - 45616 (+)
Type: null
Location: 45104 - 45616 (+)
Gene ID: HRGMv2_0148_34_35
Type: null
Location: 45680 - 47410 (+)
Type: null
Location: 45680 - 47410 (+)
Gene ID: HRGMv2_0148_34_36
Type: CAZyme
Location: 47498 - 49810 (+)
Type: CAZyme
Location: 47498 - 49810 (+)
Gene ID: HRGMv2_0148_34_37
Type: CAZyme
Location: 49831 - 51402 (+)
Type: CAZyme
Location: 49831 - 51402 (+)
Gene ID: HRGMv2_0148_34_38
Type: null
Location: 51446 - 51994 (+)
Type: null
Location: 51446 - 51994 (+)
Gene ID: HRGMv2_0148_34_40
Type: pfam
Location: 52424 - 52807 (+)
Type: pfam
Location: 52424 - 52807 (+)
Gene ID: HRGMv2_0148_34_41
Type: pfam
Location: 52848 - 53780 (+)
Type: pfam
Location: 52848 - 53780 (+)
Gene ID: HRGMv2_0148_34_42
Type: pfam
Location: 53792 - 54715 (+)
Type: pfam
Location: 53792 - 54715 (+)
Gene ID: HRGMv2_0148_34_43
Type: TC
Location: 54712 - 55965 (+)
Type: TC
Location: 54712 - 55965 (+)
Gene ID: HRGMv2_0148_34_44
Type: sulfatase
Location: 56003 - 57019 (+)
Type: sulfatase
Location: 56003 - 57019 (+)
Gene ID: HRGMv2_0148_34_45
Type: pfam
Location: 57049 - 58491 (+)
Type: pfam
Location: 57049 - 58491 (+)
Gene ID: HRGMv2_0148_34_46
Type: pfam
Location: 58534 - 60021 (+)
Type: pfam
Location: 58534 - 60021 (+)
Gene ID: HRGMv2_0148_34_47
Type: CAZyme
Location: 60142 - 62697 (+)
Type: CAZyme
Location: 60142 - 62697 (+)
Gene ID: HRGMv2_0148_34_48
Type: CAZyme
Location: 62769 - 65291 (+)
Type: CAZyme
Location: 62769 - 65291 (+)
Gene ID: HRGMv2_0148_34_49
Type: CAZyme
Location: 65300 - 66508 (+)
Type: CAZyme
Location: 65300 - 66508 (+)
Gene ID: HRGMv2_0148_34_50
Type: CAZyme
Location: 66535 - 67485 (+)
Type: CAZyme
Location: 66535 - 67485 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola plebeius
Gene Composition
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