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Genome Details

Selected Rep_genome_ID: HRGMv2_0130
Total Genomes Found: 4
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Rikenellaceae
→
Genus
Alistipes
→
Species
Alistipes sp900541585
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
HRGMv2_0130 3,564,814 98.07% 0% UK Europe HRGM
MGYG000003279 3,216,844 97.6% 0% United States North America UHGG
Rep_613 3,359,052 98.0769% 0.88141% NA NA WIS
SW209_maxbin.022 3,187,350 97.49% 0.19% NA Africa H3AfricaPhase2
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
HRGMv2_0130_CGC24 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
HRGMv2_0130_CGC8 CGCFAM_00003 Yes 7 1
HRGMv2_0130_CGC20 CGCFAM_00006 Yes 9 6
HRGMv2_0130_CGC9 CGCFAM_00104 Yes 3 1
HRGMv2_0130_CGC21 CGCFAM_00322 Yes 4 2
HRGMv2_0130_CGC39 CGCFAM_00439 Yes 7 3 host glycan
HRGMv2_0130_CGC34 CGCFAM_00475 Yes 16 2
HRGMv2_0130_CGC23 CGCFAM_00519 Yes 8 3
HRGMv2_0130_CGC2 CGCFAM_00540 Yes 9 5 pectin
HRGMv2_0130_CGC26 CGCFAM_00564 Yes 8 2
HRGMv2_0130_CGC40 CGCFAM_00617 Yes 6 1
HRGMv2_0130_CGC10 CGCFAM_00716 Yes 10 6 alginate
HRGMv2_0130_CGC18 CGCFAM_00759 Yes 4 2
HRGMv2_0130_CGC19 CGCFAM_00984 Yes 3 1
HRGMv2_0130_CGC27 CGCFAM_01434 Yes 5 2
HRGMv2_0130_CGC1 CGCFAM_01741 Yes 8 2
HRGMv2_0130_CGC5 CGCFAM_01918 Yes 3 2
HRGMv2_0130_CGC37 CGCFAM_02409 Yes 3 2
HRGMv2_0130_CGC12 CGCFAM_02852 Yes 4 1
HRGMv2_0130_CGC33 CGCFAM_02860 Yes 13 1
HRGMv2_0130_CGC14 CGCFAM_02993 Yes 7 3
HRGMv2_0130_CGC22 CGCFAM_03767 Yes 8 2
HRGMv2_0130_CGC13 CGCFAM_05937 Yes 8 5
HRGMv2_0130_CGC41 CGCFAM_05938 Yes 11 4
HRGMv2_0130_CGC15 CGCFAM_08409 Yes 13 6
Top CAZyme Families