Cluster: HRGMv2_0130_CGC20
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0130
- CGC Family ID: CGCFAM_00006
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0130_5 | HRGMv2_0130_5_101 | 138097 | 138987 | + | GT2 |
| CAZyme | HRGMv2_0130_5 | HRGMv2_0130_5_102 | 138984 | 140180 | + | GT2 |
| CAZyme | HRGMv2_0130_5 | HRGMv2_0130_5_103 | 140177 | 141295 | + | GT4 |
| pfam | HRGMv2_0130_5 | HRGMv2_0130_5_104 | 141315 | 141920 | + | Hexapep | Hexapep_2 |
| CAZyme | HRGMv2_0130_5 | HRGMv2_0130_5_105 | 141917 | 143017 | + | GT94 |
| TC | HRGMv2_0130_5 | HRGMv2_0130_5_106 | 142998 | 144476 | + | 2.A.66.2.7 |
| NULL(UNKNOWN) | HRGMv2_0130_5 | HRGMv2_0130_5_107 | 144483 | 145616 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0130_5 | HRGMv2_0130_5_108 | 145613 | 146359 | + | GT32 |
| CAZyme | HRGMv2_0130_5 | HRGMv2_0130_5_109 | 146373 | 147545 | + | GT2 |
Gene ID: HRGMv2_0130_5_101
Type: CAZyme
Location: 138097 - 138987 (+)
Type: CAZyme
Location: 138097 - 138987 (+)
Gene ID: HRGMv2_0130_5_102
Type: CAZyme
Location: 138984 - 140180 (+)
Type: CAZyme
Location: 138984 - 140180 (+)
Gene ID: HRGMv2_0130_5_103
Type: CAZyme
Location: 140177 - 141295 (+)
Type: CAZyme
Location: 140177 - 141295 (+)
Gene ID: HRGMv2_0130_5_104
Type: pfam
Location: 141315 - 141920 (+)
Type: pfam
Location: 141315 - 141920 (+)
Gene ID: HRGMv2_0130_5_105
Type: CAZyme
Location: 141917 - 143017 (+)
Type: CAZyme
Location: 141917 - 143017 (+)
Gene ID: HRGMv2_0130_5_106
Type: TC
Location: 142998 - 144476 (+)
Type: TC
Location: 142998 - 144476 (+)
Gene ID: HRGMv2_0130_5_107
Type:
Location: 144483 - 145616 (+)
Type:
Location: 144483 - 145616 (+)
Gene ID: HRGMv2_0130_5_108
Type: CAZyme
Location: 145613 - 146359 (+)
Type: CAZyme
Location: 145613 - 146359 (+)
Gene ID: HRGMv2_0130_5_109
Type: CAZyme
Location: 146373 - 147545 (+)
Type: CAZyme
Location: 146373 - 147545 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900541585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0130_5_104 | vegetarian > vegan | 1.24215 | 0.00000 |
| HRGMv2_0130_5_107 | vegetarian > vegan | 1.17477 | 0.00000 |