Cluster: HRGMv2_0130_CGC15
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_0130
- CGC Family ID: CGCFAM_08409
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0130_4 | HRGMv2_0130_4_11 | 12976 | 14226 | - | CE9 |
| TC | HRGMv2_0130_4 | HRGMv2_0130_4_12 | 14228 | 15694 | - | 2.A.1.14.25 |
| NULL(UNKNOWN) | HRGMv2_0130_4 | HRGMv2_0130_4_13 | 15706 | 16677 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0130_4 | HRGMv2_0130_4_14 | 16695 | 17459 | - | Glucosamine_iso |
| CAZyme | HRGMv2_0130_4 | HRGMv2_0130_4_15 | 17489 | 19270 | - | PL1_2 |
| NULL(UNKNOWN) | HRGMv2_0130_4 | HRGMv2_0130_4_16 | 19283 | 21280 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_0130_4 | HRGMv2_0130_4_17 | 21297 | 23240 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_0130_4 | HRGMv2_0130_4_18 | 23243 | 26431 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_0130_4 | HRGMv2_0130_4_19 | 26462 | 27232 | - | CE12 |
| CAZyme | HRGMv2_0130_4 | HRGMv2_0130_4_20 | 27246 | 28013 | - | CE12 |
| TF | HRGMv2_0130_4 | HRGMv2_0130_4_21 | 28277 | 29347 | + | LacI |
| CAZyme | HRGMv2_0130_4 | HRGMv2_0130_4_22 | 29470 | 30933 | + | PL1_2 |
| CAZyme | HRGMv2_0130_4 | HRGMv2_0130_4_23 | 30939 | 32525 | + | PL10_2 |
Gene ID: HRGMv2_0130_4_11
Type: CAZyme
Location: 12976 - 14226 (-)
Type: CAZyme
Location: 12976 - 14226 (-)
Gene ID: HRGMv2_0130_4_12
Type: TC
Location: 14228 - 15694 (-)
Type: TC
Location: 14228 - 15694 (-)
Gene ID: HRGMv2_0130_4_13
Type:
Location: 15706 - 16677 (-)
Type:
Location: 15706 - 16677 (-)
Gene ID: HRGMv2_0130_4_14
Type: pfam
Location: 16695 - 17459 (-)
Type: pfam
Location: 16695 - 17459 (-)
Gene ID: HRGMv2_0130_4_15
Type: CAZyme
Location: 17489 - 19270 (-)
Type: CAZyme
Location: 17489 - 19270 (-)
Gene ID: HRGMv2_0130_4_16
Type:
Location: 19283 - 21280 (-)
Type:
Location: 19283 - 21280 (-)
Gene ID: HRGMv2_0130_4_17
Type: pfam
Location: 21297 - 23240 (-)
Type: pfam
Location: 21297 - 23240 (-)
Gene ID: HRGMv2_0130_4_18
Type: TC
Location: 23243 - 26431 (-)
Type: TC
Location: 23243 - 26431 (-)
Gene ID: HRGMv2_0130_4_19
Type: CAZyme
Location: 26462 - 27232 (-)
Type: CAZyme
Location: 26462 - 27232 (-)
Gene ID: HRGMv2_0130_4_20
Type: CAZyme
Location: 27246 - 28013 (-)
Type: CAZyme
Location: 27246 - 28013 (-)
Gene ID: HRGMv2_0130_4_21
Type: TF
Location: 28277 - 29347 (+)
Type: TF
Location: 28277 - 29347 (+)
Gene ID: HRGMv2_0130_4_22
Type: CAZyme
Location: 29470 - 30933 (+)
Type: CAZyme
Location: 29470 - 30933 (+)
Gene ID: HRGMv2_0130_4_23
Type: CAZyme
Location: 30939 - 32525 (+)
Type: CAZyme
Location: 30939 - 32525 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900541585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.