Cluster: HRGMv2_0130_CGC33
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0130
- CGC Family ID: CGCFAM_02860
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0130_9 | HRGMv2_0130_9_61 | 66845 | 68350 | - | 8.A.46.2.2 |
| TC | HRGMv2_0130_9 | HRGMv2_0130_9_62 | 68364 | 71966 | - | 1.B.14.6.2 |
| STP | HRGMv2_0130_9 | HRGMv2_0130_9_63 | 72201 | 73199 | - | FecR |
| TF | HRGMv2_0130_9 | HRGMv2_0130_9_64 | 73327 | 73857 | - | GerE |
| TC | HRGMv2_0130_9 | HRGMv2_0130_9_65 | 74350 | 75807 | + | 2.A.3.7.1 |
| TC | HRGMv2_0130_9 | HRGMv2_0130_9_66 | 75804 | 78185 | - | 1.B.14.6.5 |
| TC | HRGMv2_0130_9 | HRGMv2_0130_9_67 | 78203 | 79039 | - | 2.A.28.1.8 |
| TF | HRGMv2_0130_9 | HRGMv2_0130_9_68 | 79233 | 79829 | + | GerE |
| STP | HRGMv2_0130_9 | HRGMv2_0130_9_69 | 79944 | 80909 | + | FecR |
| TC | HRGMv2_0130_9 | HRGMv2_0130_9_70 | 81064 | 84279 | + | 1.B.14.6.1 |
| pfam | HRGMv2_0130_9 | HRGMv2_0130_9_71 | 84299 | 86167 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_0130_9 | HRGMv2_0130_9_72 | 86189 | 87511 | + | F5_F8_type_C | BT_3987-like_N | BT_3987-like_N | F5_F8_type_C_2 |
| CAZyme | HRGMv2_0130_9 | HRGMv2_0130_9_73 | 87508 | 89157 | + | GH27 |
Gene ID: HRGMv2_0130_9_61
Type: TC
Location: 66845 - 68350 (-)
Type: TC
Location: 66845 - 68350 (-)
Gene ID: HRGMv2_0130_9_62
Type: TC
Location: 68364 - 71966 (-)
Type: TC
Location: 68364 - 71966 (-)
Gene ID: HRGMv2_0130_9_63
Type: STP
Location: 72201 - 73199 (-)
Type: STP
Location: 72201 - 73199 (-)
Gene ID: HRGMv2_0130_9_64
Type: TF
Location: 73327 - 73857 (-)
Type: TF
Location: 73327 - 73857 (-)
Gene ID: HRGMv2_0130_9_65
Type: TC
Location: 74350 - 75807 (+)
Type: TC
Location: 74350 - 75807 (+)
Gene ID: HRGMv2_0130_9_66
Type: TC
Location: 75804 - 78185 (-)
Type: TC
Location: 75804 - 78185 (-)
Gene ID: HRGMv2_0130_9_67
Type: TC
Location: 78203 - 79039 (-)
Type: TC
Location: 78203 - 79039 (-)
Gene ID: HRGMv2_0130_9_68
Type: TF
Location: 79233 - 79829 (+)
Type: TF
Location: 79233 - 79829 (+)
Gene ID: HRGMv2_0130_9_69
Type: STP
Location: 79944 - 80909 (+)
Type: STP
Location: 79944 - 80909 (+)
Gene ID: HRGMv2_0130_9_70
Type: TC
Location: 81064 - 84279 (+)
Type: TC
Location: 81064 - 84279 (+)
Gene ID: HRGMv2_0130_9_71
Type: pfam
Location: 84299 - 86167 (+)
Type: pfam
Location: 84299 - 86167 (+)
Gene ID: HRGMv2_0130_9_72
Type: pfam
Location: 86189 - 87511 (+)
Type: pfam
Location: 86189 - 87511 (+)
Gene ID: HRGMv2_0130_9_73
Type: CAZyme
Location: 87508 - 89157 (+)
Type: CAZyme
Location: 87508 - 89157 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900541585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.