Cluster: HRGMv2_0130_CGC10
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate: alginate
- Genome ID: HRGMv2_0130
- CGC Family ID: CGCFAM_00716
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0130_2 | HRGMv2_0130_2_76 | 108701 | 110284 | + | GH20 |
| CAZyme | HRGMv2_0130_2 | HRGMv2_0130_2_77 | 110358 | 112556 | - | GH36 |
| NULL(UNKNOWN) | HRGMv2_0130_2 | HRGMv2_0130_2_78 | 112730 | 113707 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0130_2 | HRGMv2_0130_2_79 | 113729 | 115294 | - | PL29 |
| CAZyme | HRGMv2_0130_2 | HRGMv2_0130_2_80 | 115299 | 117494 | - | PL17 | PL17_2 |
| CAZyme | HRGMv2_0130_2 | HRGMv2_0130_2_81 | 117511 | 119919 | - | PL6 | PL6_1 |
| CAZyme | HRGMv2_0130_2 | HRGMv2_0130_2_82 | 119927 | 121411 | - | PL6_1 |
| pfam | HRGMv2_0130_2 | HRGMv2_0130_2_83 | 121429 | 123105 | - | TIG |
| TC | HRGMv2_0130_2 | HRGMv2_0130_2_84 | 123118 | 124644 | - | 8.A.46.1.5 |
| TC | HRGMv2_0130_2 | HRGMv2_0130_2_85 | 124656 | 127814 | - | 1.B.14.6.1 |
Gene ID: HRGMv2_0130_2_76
Type: CAZyme
Location: 108701 - 110284 (+)
Type: CAZyme
Location: 108701 - 110284 (+)
Gene ID: HRGMv2_0130_2_77
Type: CAZyme
Location: 110358 - 112556 (-)
Type: CAZyme
Location: 110358 - 112556 (-)
Gene ID: HRGMv2_0130_2_78
Type:
Location: 112730 - 113707 (-)
Type:
Location: 112730 - 113707 (-)
Gene ID: HRGMv2_0130_2_79
Type: CAZyme
Location: 113729 - 115294 (-)
Type: CAZyme
Location: 113729 - 115294 (-)
Gene ID: HRGMv2_0130_2_80
Type: CAZyme
Location: 115299 - 117494 (-)
Type: CAZyme
Location: 115299 - 117494 (-)
Gene ID: HRGMv2_0130_2_81
Type: CAZyme
Location: 117511 - 119919 (-)
Type: CAZyme
Location: 117511 - 119919 (-)
Gene ID: HRGMv2_0130_2_82
Type: CAZyme
Location: 119927 - 121411 (-)
Type: CAZyme
Location: 119927 - 121411 (-)
Gene ID: HRGMv2_0130_2_83
Type: pfam
Location: 121429 - 123105 (-)
Type: pfam
Location: 121429 - 123105 (-)
Gene ID: HRGMv2_0130_2_84
Type: TC
Location: 123118 - 124644 (-)
Type: TC
Location: 123118 - 124644 (-)
Gene ID: HRGMv2_0130_2_85
Type: TC
Location: 124656 - 127814 (-)
Type: TC
Location: 124656 - 127814 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes sp900541585
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.