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Cluster: HRGMv2_0130_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0130_18 HRGMv2_0130_18_23 25703 28447 + GH3
pfam HRGMv2_0130_18 HRGMv2_0130_18_24 28464 30710 + DUF4988
pfam HRGMv2_0130_18 HRGMv2_0130_18_25 30738 33017 + DUF4988
TC HRGMv2_0130_18 HRGMv2_0130_18_26 33039 35708 + 1.B.14.6.1
NULL(UNKNOWN) HRGMv2_0130_18 HRGMv2_0130_18_27 35705 36217 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_0130_18 HRGMv2_0130_18_28 36229 37944 + 8.A.46.1.3
pfam HRGMv2_0130_18 HRGMv2_0130_18_29 37964 38935 + DUF5017
CAZyme HRGMv2_0130_18 HRGMv2_0130_18_30 38956 39747 + GH16_3
CAZyme HRGMv2_0130_18 HRGMv2_0130_18_31 39765 41381 + GH16_3
CAZyme HRGMv2_0130_18 HRGMv2_0130_18_32 41395 44235 + CE15 | GH20
TC HRGMv2_0130_18 HRGMv2_0130_18_33 44335 45318 - 1.A.35.1.2
Gene ID: HRGMv2_0130_18_23
Type: CAZyme
Location: 25703 - 28447 (+)
Gene ID: HRGMv2_0130_18_24
Type: pfam
Location: 28464 - 30710 (+)
Gene ID: HRGMv2_0130_18_25
Type: pfam
Location: 30738 - 33017 (+)
Gene ID: HRGMv2_0130_18_26
Type: TC
Location: 33039 - 35708 (+)
Gene ID: HRGMv2_0130_18_27
Type:
Location: 35705 - 36217 (+)
Gene ID: HRGMv2_0130_18_28
Type: TC
Location: 36229 - 37944 (+)
Gene ID: HRGMv2_0130_18_29
Type: pfam
Location: 37964 - 38935 (+)
Gene ID: HRGMv2_0130_18_30
Type: CAZyme
Location: 38956 - 39747 (+)
Gene ID: HRGMv2_0130_18_31
Type: CAZyme
Location: 39765 - 41381 (+)
Gene ID: HRGMv2_0130_18_32
Type: CAZyme
Location: 41395 - 44235 (+)
Gene ID: HRGMv2_0130_18_33
Type: TC
Location: 44335 - 45318 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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