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Genome Details

Selected Rep_genome_ID: A41.CMAG_2
Total Genomes Found: 7
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola coprocola
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
A41.CMAG_2 3,891,527 98.88% 0.07% China(Inner Mongolia) Asia IMGG
Rep_520 3,767,473 93.5821% 0.124378% NA NA WIS
SPMP10_bin.73 3,573,981 97.17% 0.37% Singapore Asia SPMP
SPMP46_bin.29 3,208,202 92.17% 1.31% Singapore Asia SPMP
SPMP48_bin.21 3,658,994 96.97% 0.6% Singapore Asia SPMP
SPMP50_bin.68 3,575,993 96.92% 3.73% Singapore Asia SPMP
SPMP54_bin.55 3,606,556 96.75% 1.89% Singapore Asia SPMP
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
A41.CMAG_2_CGC17 CGCFAM_00001 Yes 5 3 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
A41.CMAG_2_CGC2 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
A41.CMAG_2_CGC51 CGCFAM_00001 Yes 6 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
A41.CMAG_2_CGC15 CGCFAM_00016 Yes 10 4 host glycan
A41.CMAG_2_CGC43 CGCFAM_00016 Yes 5 2 host glycan
A41.CMAG_2_CGC16 CGCFAM_00017 Yes 6 3 fructan
A41.CMAG_2_CGC1 CGCFAM_00025 Yes 10 3 pectin/alpha-glucan
A41.CMAG_2_CGC30 CGCFAM_00028 Yes 4 3
A41.CMAG_2_CGC4 CGCFAM_00030 Yes 3 1
A41.CMAG_2_CGC19 CGCFAM_00048 Yes 11 2
A41.CMAG_2_CGC31 CGCFAM_00061 Yes 4 1
A41.CMAG_2_CGC8 CGCFAM_00062 Yes 7 2 beta-glucan
A41.CMAG_2_CGC23 CGCFAM_00082 Yes 5 2 beta-mannan
A41.CMAG_2_CGC39 CGCFAM_00101 Yes 12 8 beta-glucan
A41.CMAG_2_CGC7 CGCFAM_00111 Yes 4 1 alpha-glucan
A41.CMAG_2_CGC29 CGCFAM_00129 Yes 6 4 beta-mannan
A41.CMAG_2_CGC5 CGCFAM_00180 Yes 10 8
A41.CMAG_2_CGC44 CGCFAM_00229 Yes 10 1
A41.CMAG_2_CGC12 CGCFAM_00275 Yes 15 7
A41.CMAG_2_CGC32 CGCFAM_00316 Yes 7 2
A41.CMAG_2_CGC48 CGCFAM_00321 Yes 8 3
A41.CMAG_2_CGC37 CGCFAM_00367 Yes 3 1
A41.CMAG_2_CGC40 CGCFAM_00479 Yes 11 4 host glycan
A41.CMAG_2_CGC41 CGCFAM_00551 Yes 4 1
A41.CMAG_2_CGC50 CGCFAM_00579 Yes 15 8
Top CAZyme Families