Cluster: A41.CMAG_2_CGC15
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00016
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_700 | 841959 | 844250 | + | 1.B.14.1.4 |
| pfam | A41_contig_166 | A41_contig_166_701 | 844510 | 846000 | - | BACON | BACON | BACON_2 |
| CAZyme | A41_contig_166 | A41_contig_166_702 | 846020 | 847426 | - | GH18 |
| pfam | A41_contig_166 | A41_contig_166_703 | 847447 | 848616 | - | BT_3987-like_N | Laminin_G_3 |
| pfam | A41_contig_166 | A41_contig_166_704 | 848627 | 849733 | - | GH18_BT1044-like |
| TC | A41_contig_166 | A41_contig_166_705 | 849763 | 851361 | - | 8.A.46.2.2 |
| TC | A41_contig_166 | A41_contig_166_706 | 851374 | 854808 | - | 1.B.14.6.13 |
| CAZyme | A41_contig_166 | A41_contig_166_707 | 855203 | 856585 | - | GH28 |
| CAZyme | A41_contig_166 | A41_contig_166_708 | 856599 | 857306 | - | CBM91 |
| CAZyme | A41_contig_166 | A41_contig_166_709 | 857364 | 858182 | - | GH43_10 |
Gene ID: A41_contig_166_700
Type: TC
Location: 841959 - 844250 (+)
Type: TC
Location: 841959 - 844250 (+)
Gene ID: A41_contig_166_701
Type: pfam
Location: 844510 - 846000 (-)
Type: pfam
Location: 844510 - 846000 (-)
Gene ID: A41_contig_166_702
Type: CAZyme
Location: 846020 - 847426 (-)
Type: CAZyme
Location: 846020 - 847426 (-)
Gene ID: A41_contig_166_703
Type: pfam
Location: 847447 - 848616 (-)
Type: pfam
Location: 847447 - 848616 (-)
Gene ID: A41_contig_166_704
Type: pfam
Location: 848627 - 849733 (-)
Type: pfam
Location: 848627 - 849733 (-)
Gene ID: A41_contig_166_705
Type: TC
Location: 849763 - 851361 (-)
Type: TC
Location: 849763 - 851361 (-)
Gene ID: A41_contig_166_706
Type: TC
Location: 851374 - 854808 (-)
Type: TC
Location: 851374 - 854808 (-)
Gene ID: A41_contig_166_707
Type: CAZyme
Location: 855203 - 856585 (-)
Type: CAZyme
Location: 855203 - 856585 (-)
Gene ID: A41_contig_166_708
Type: CAZyme
Location: 856599 - 857306 (-)
Type: CAZyme
Location: 856599 - 857306 (-)
Gene ID: A41_contig_166_709
Type: CAZyme
Location: 857364 - 858182 (-)
Type: CAZyme
Location: 857364 - 858182 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_707 | vegetarian > omnivore | 1.53347 | 0.03780 |
| A41_contig_166_707 | vegetarian > vegan | 1.35255 | 0.01450 |
| A41_contig_166_708 | vegetarian > omnivore | 1.35396 | 0.03780 |
| A41_contig_166_708 | vegetarian > vegan | 1.24658 | 0.01450 |
| A41_contig_166_709 | vegetarian > omnivore | 1.26383 | 0.03780 |
| A41_contig_166_709 | vegetarian > vegan | 1.06656 | 0.01450 |