Cluster: A41.CMAG_2_CGC39
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate: beta-glucan
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00101
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A41_contig_166 | A41_contig_166_2641 | 3019848 | 3022070 | - | GH3 |
| CAZyme | A41_contig_166 | A41_contig_166_2642 | 3022098 | 3024569 | - | GH2 |
| CAZyme | A41_contig_166 | A41_contig_166_2643 | 3024620 | 3027496 | - | GH31_4 |
| TF | A41_contig_166 | A41_contig_166_2644 | 3027656 | 3031678 | - | HTH_AraC | HTH_AraC |
| CAZyme | A41_contig_166 | A41_contig_166_2645 | 3032037 | 3033740 | - | GH5_4 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_2646 | 3033819 | 3035621 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A41_contig_166 | A41_contig_166_2647 | 3035636 | 3037369 | - | SusD_RagB | SusD-like_3 |
| TC | A41_contig_166 | A41_contig_166_2648 | 3037396 | 3040569 | - | 1.B.14.6.1 |
| CAZyme | A41_contig_166 | A41_contig_166_2649 | 3040791 | 3043268 | - | GH127 |
| CAZyme | A41_contig_166 | A41_contig_166_2650 | 3043454 | 3045610 | + | GH3 |
| CAZyme | A41_contig_166 | A41_contig_166_2651 | 3045831 | 3047834 | - | GH2 |
| CAZyme | A41_contig_166 | A41_contig_166_2652 | 3047852 | 3048607 | - | CE3 |
Gene ID: A41_contig_166_2641
Type: CAZyme
Location: 3019848 - 3022070 (-)
Type: CAZyme
Location: 3019848 - 3022070 (-)
Gene ID: A41_contig_166_2642
Type: CAZyme
Location: 3022098 - 3024569 (-)
Type: CAZyme
Location: 3022098 - 3024569 (-)
Gene ID: A41_contig_166_2643
Type: CAZyme
Location: 3024620 - 3027496 (-)
Type: CAZyme
Location: 3024620 - 3027496 (-)
Gene ID: A41_contig_166_2644
Type: TF
Location: 3027656 - 3031678 (-)
Type: TF
Location: 3027656 - 3031678 (-)
Gene ID: A41_contig_166_2645
Type: CAZyme
Location: 3032037 - 3033740 (-)
Type: CAZyme
Location: 3032037 - 3033740 (-)
Gene ID: A41_contig_166_2646
Type:
Location: 3033819 - 3035621 (-)
Type:
Location: 3033819 - 3035621 (-)
Gene ID: A41_contig_166_2647
Type: pfam
Location: 3035636 - 3037369 (-)
Type: pfam
Location: 3035636 - 3037369 (-)
Gene ID: A41_contig_166_2648
Type: TC
Location: 3037396 - 3040569 (-)
Type: TC
Location: 3037396 - 3040569 (-)
Gene ID: A41_contig_166_2649
Type: CAZyme
Location: 3040791 - 3043268 (-)
Type: CAZyme
Location: 3040791 - 3043268 (-)
Gene ID: A41_contig_166_2650
Type: CAZyme
Location: 3043454 - 3045610 (+)
Type: CAZyme
Location: 3043454 - 3045610 (+)
Gene ID: A41_contig_166_2651
Type: CAZyme
Location: 3045831 - 3047834 (-)
Type: CAZyme
Location: 3045831 - 3047834 (-)
Gene ID: A41_contig_166_2652
Type: CAZyme
Location: 3047852 - 3048607 (-)
Type: CAZyme
Location: 3047852 - 3048607 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.