Cluster: A41.CMAG_2_CGC19
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00048
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_982 | 1177086 | 1178054 | + | 1.A.34.1.3 |
| TF | A41_contig_166 | A41_contig_166_983 | 1178079 | 1178426 | + | MerR |
| STP | A41_contig_166 | A41_contig_166_984 | 1178673 | 1180946 | - | HD |
| CAZyme | A41_contig_166 | A41_contig_166_985 | 1181125 | 1182384 | - | GH23 |
| pfam | A41_contig_166 | A41_contig_166_986 | 1182388 | 1183182 | - | DUF5683 |
| pfam | A41_contig_166 | A41_contig_166_987 | 1183195 | 1184094 | - | ParBc | HTH_ParB | ParB_dimer |
| TC | A41_contig_166 | A41_contig_166_988 | 1184126 | 1184887 | - | 8.A.3.2.3 |
| pfam | A41_contig_166 | A41_contig_166_989 | 1185099 | 1185872 | + | SurE |
| CAZyme | A41_contig_166 | A41_contig_166_990 | 1185869 | 1187011 | + | GT19 |
| pfam | A41_contig_166 | A41_contig_166_991 | 1187224 | 1188069 | - | CTP_transf_1 |
| TC | A41_contig_166 | A41_contig_166_992 | 1188181 | 1190217 | - | 3.A.16.1.1 |
Gene ID: A41_contig_166_982
Type: TC
Location: 1177086 - 1178054 (+)
Type: TC
Location: 1177086 - 1178054 (+)
Gene ID: A41_contig_166_983
Type: TF
Location: 1178079 - 1178426 (+)
Type: TF
Location: 1178079 - 1178426 (+)
Gene ID: A41_contig_166_984
Type: STP
Location: 1178673 - 1180946 (-)
Type: STP
Location: 1178673 - 1180946 (-)
Gene ID: A41_contig_166_985
Type: CAZyme
Location: 1181125 - 1182384 (-)
Type: CAZyme
Location: 1181125 - 1182384 (-)
Gene ID: A41_contig_166_986
Type: pfam
Location: 1182388 - 1183182 (-)
Type: pfam
Location: 1182388 - 1183182 (-)
Gene ID: A41_contig_166_987
Type: pfam
Location: 1183195 - 1184094 (-)
Type: pfam
Location: 1183195 - 1184094 (-)
Gene ID: A41_contig_166_988
Type: TC
Location: 1184126 - 1184887 (-)
Type: TC
Location: 1184126 - 1184887 (-)
Gene ID: A41_contig_166_989
Type: pfam
Location: 1185099 - 1185872 (+)
Type: pfam
Location: 1185099 - 1185872 (+)
Gene ID: A41_contig_166_990
Type: CAZyme
Location: 1185869 - 1187011 (+)
Type: CAZyme
Location: 1185869 - 1187011 (+)
Gene ID: A41_contig_166_991
Type: pfam
Location: 1187224 - 1188069 (-)
Type: pfam
Location: 1187224 - 1188069 (-)
Gene ID: A41_contig_166_992
Type: TC
Location: 1188181 - 1190217 (-)
Type: TC
Location: 1188181 - 1190217 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.