Cluster: A41.CMAG_2_CGC44
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00229
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A41_contig_166 | A41_contig_166_2852 | 3271297 | 3272247 | + | GT2 |
| pfam | A41_contig_166 | A41_contig_166_2853 | 3272250 | 3272816 | + | DUF6452 |
| pfam | A41_contig_166 | A41_contig_166_2854 | 3272764 | 3273477 | + | DUF6048 |
| TC | A41_contig_166 | A41_contig_166_2855 | 3273484 | 3274053 | + | 2.A.107.1.2 |
| pfam | A41_contig_166 | A41_contig_166_2856 | 3274076 | 3275089 | + | ApbE |
| TC | A41_contig_166 | A41_contig_166_2857 | 3275104 | 3277095 | + | 2.A.67.4.2 |
| peptidase | A41_contig_166 | A41_contig_166_2858 | 3277365 | 3278207 | + | S09.UPW |
| pfam | A41_contig_166 | A41_contig_166_2859 | 3278317 | 3278835 | + | Ribosomal_S16 |
| TC | A41_contig_166 | A41_contig_166_2860 | 3279297 | 3282629 | + | 1.B.14.6.1 |
| TC | A41_contig_166 | A41_contig_166_2861 | 3282643 | 3284679 | + | 8.A.46.1.3 |
Gene ID: A41_contig_166_2852
Type: CAZyme
Location: 3271297 - 3272247 (+)
Type: CAZyme
Location: 3271297 - 3272247 (+)
Gene ID: A41_contig_166_2853
Type: pfam
Location: 3272250 - 3272816 (+)
Type: pfam
Location: 3272250 - 3272816 (+)
Gene ID: A41_contig_166_2854
Type: pfam
Location: 3272764 - 3273477 (+)
Type: pfam
Location: 3272764 - 3273477 (+)
Gene ID: A41_contig_166_2855
Type: TC
Location: 3273484 - 3274053 (+)
Type: TC
Location: 3273484 - 3274053 (+)
Gene ID: A41_contig_166_2856
Type: pfam
Location: 3274076 - 3275089 (+)
Type: pfam
Location: 3274076 - 3275089 (+)
Gene ID: A41_contig_166_2857
Type: TC
Location: 3275104 - 3277095 (+)
Type: TC
Location: 3275104 - 3277095 (+)
Gene ID: A41_contig_166_2858
Type: peptidase
Location: 3277365 - 3278207 (+)
Type: peptidase
Location: 3277365 - 3278207 (+)
Gene ID: A41_contig_166_2859
Type: pfam
Location: 3278317 - 3278835 (+)
Type: pfam
Location: 3278317 - 3278835 (+)
Gene ID: A41_contig_166_2860
Type: TC
Location: 3279297 - 3282629 (+)
Type: TC
Location: 3279297 - 3282629 (+)
Gene ID: A41_contig_166_2861
Type: TC
Location: 3282643 - 3284679 (+)
Type: TC
Location: 3282643 - 3284679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.