Cluster: A41.CMAG_2_CGC50
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00579
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A41_contig_166 | A41_contig_166_3214 | 3717933 | 3720155 | + | GH92 |
| STP | A41_contig_166 | A41_contig_166_3215 | 3720249 | 3721244 | + | FecR |
| CAZyme | A41_contig_166 | A41_contig_166_3216 | 3721276 | 3723555 | + | GH92 |
| CAZyme | A41_contig_166 | A41_contig_166_3217 | 3723571 | 3725847 | + | GH92 |
| pfam | A41_contig_166 | A41_contig_166_3218 | 3726235 | 3727602 | + | MFS_1 | MFS_1 |
| CAZyme | A41_contig_166 | A41_contig_166_3219 | 3727626 | 3728597 | + | GH130_2 |
| CAZyme | A41_contig_166 | A41_contig_166_3220 | 3728717 | 3730948 | + | GH92 |
| TC | A41_contig_166 | A41_contig_166_3221 | 3731031 | 3731675 | - | 2.A.95.1.4 |
| TC | A41_contig_166 | A41_contig_166_3222 | 3738017 | 3739180 | - | 2.A.1.7.16 |
| CAZyme | A41_contig_166 | A41_contig_166_3223 | 3739251 | 3741638 | - | GH92 |
| CAZyme | A41_contig_166 | A41_contig_166_3224 | 3741643 | 3742827 | - | GH76 |
| CAZyme | A41_contig_166 | A41_contig_166_3225 | 3742824 | 3744029 | - | GH76 |
| pfam | A41_contig_166 | A41_contig_166_3226 | 3744109 | 3745227 | - | SusE |
| pfam | A41_contig_166 | A41_contig_166_3227 | 3745233 | 3746834 | - | SusD_RagB | SusD-like_3 |
| TC | A41_contig_166 | A41_contig_166_3228 | 3746841 | 3749831 | - | 1.B.14.6.1 |
Gene ID: A41_contig_166_3214
Type: CAZyme
Location: 3717933 - 3720155 (+)
Type: CAZyme
Location: 3717933 - 3720155 (+)
Gene ID: A41_contig_166_3215
Type: STP
Location: 3720249 - 3721244 (+)
Type: STP
Location: 3720249 - 3721244 (+)
Gene ID: A41_contig_166_3216
Type: CAZyme
Location: 3721276 - 3723555 (+)
Type: CAZyme
Location: 3721276 - 3723555 (+)
Gene ID: A41_contig_166_3217
Type: CAZyme
Location: 3723571 - 3725847 (+)
Type: CAZyme
Location: 3723571 - 3725847 (+)
Gene ID: A41_contig_166_3218
Type: pfam
Location: 3726235 - 3727602 (+)
Type: pfam
Location: 3726235 - 3727602 (+)
Gene ID: A41_contig_166_3219
Type: CAZyme
Location: 3727626 - 3728597 (+)
Type: CAZyme
Location: 3727626 - 3728597 (+)
Gene ID: A41_contig_166_3220
Type: CAZyme
Location: 3728717 - 3730948 (+)
Type: CAZyme
Location: 3728717 - 3730948 (+)
Gene ID: A41_contig_166_3221
Type: TC
Location: 3731031 - 3731675 (-)
Type: TC
Location: 3731031 - 3731675 (-)
Gene ID: A41_contig_166_3222
Type: TC
Location: 3738017 - 3739180 (-)
Type: TC
Location: 3738017 - 3739180 (-)
Gene ID: A41_contig_166_3223
Type: CAZyme
Location: 3739251 - 3741638 (-)
Type: CAZyme
Location: 3739251 - 3741638 (-)
Gene ID: A41_contig_166_3224
Type: CAZyme
Location: 3741643 - 3742827 (-)
Type: CAZyme
Location: 3741643 - 3742827 (-)
Gene ID: A41_contig_166_3225
Type: CAZyme
Location: 3742824 - 3744029 (-)
Type: CAZyme
Location: 3742824 - 3744029 (-)
Gene ID: A41_contig_166_3226
Type: pfam
Location: 3744109 - 3745227 (-)
Type: pfam
Location: 3744109 - 3745227 (-)
Gene ID: A41_contig_166_3227
Type: pfam
Location: 3745233 - 3746834 (-)
Type: pfam
Location: 3745233 - 3746834 (-)
Gene ID: A41_contig_166_3228
Type: TC
Location: 3746841 - 3749831 (-)
Type: TC
Location: 3746841 - 3749831 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_3222 | vegetarian > vegan | 1.15244 | 0.01450 |
| A41_contig_166_3223 | vegetarian > vegan | 1.01151 | 0.01450 |
| A41_contig_166_3224 | vegetarian > vegan | 1.04649 | 0.01450 |