Cluster: A41.CMAG_2_CGC12
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00275
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A41_contig_166 | A41_contig_166_509 | 631382 | 633115 | + | CBM32 | GH43_28 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_510 | 633269 | 636118 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | A41_contig_166 | A41_contig_166_511 | 636234 | 639314 | + | 1.B.14.6.1 |
| TC | A41_contig_166 | A41_contig_166_512 | 639338 | 640816 | + | 8.A.46.1.3 |
| CAZyme | A41_contig_166 | A41_contig_166_513 | 640915 | 642273 | + | GH144 |
| CAZyme | A41_contig_166 | A41_contig_166_514 | 642297 | 644597 | + | GH3 |
| CAZyme | A41_contig_166 | A41_contig_166_515 | 644932 | 646119 | + | GH76 |
| CAZyme | A41_contig_166 | A41_contig_166_516 | 646132 | 647601 | + | GH125 |
| TC | A41_contig_166 | A41_contig_166_517 | 647676 | 650795 | + | 1.B.14.6.1 |
| pfam | A41_contig_166 | A41_contig_166_518 | 650826 | 652427 | + | SusD_RagB | SusD-like_3 |
| pfam | A41_contig_166 | A41_contig_166_519 | 652458 | 653615 | + | SusE |
| CAZyme | A41_contig_166 | A41_contig_166_520 | 653623 | 654747 | + | GH76 |
| pfam | A41_contig_166 | A41_contig_166_521 | 654928 | 656124 | - | DDE_Tnp_1 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_522 | 656339 | 656506 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | A41_contig_166 | A41_contig_166_523 | 656887 | 658842 | + | GH97 |
Gene ID: A41_contig_166_509
Type: CAZyme
Location: 631382 - 633115 (+)
Type: CAZyme
Location: 631382 - 633115 (+)
Gene ID: A41_contig_166_510
Type:
Location: 633269 - 636118 (+)
Type:
Location: 633269 - 636118 (+)
Gene ID: A41_contig_166_511
Type: TC
Location: 636234 - 639314 (+)
Type: TC
Location: 636234 - 639314 (+)
Gene ID: A41_contig_166_512
Type: TC
Location: 639338 - 640816 (+)
Type: TC
Location: 639338 - 640816 (+)
Gene ID: A41_contig_166_513
Type: CAZyme
Location: 640915 - 642273 (+)
Type: CAZyme
Location: 640915 - 642273 (+)
Gene ID: A41_contig_166_514
Type: CAZyme
Location: 642297 - 644597 (+)
Type: CAZyme
Location: 642297 - 644597 (+)
Gene ID: A41_contig_166_515
Type: CAZyme
Location: 644932 - 646119 (+)
Type: CAZyme
Location: 644932 - 646119 (+)
Gene ID: A41_contig_166_516
Type: CAZyme
Location: 646132 - 647601 (+)
Type: CAZyme
Location: 646132 - 647601 (+)
Gene ID: A41_contig_166_517
Type: TC
Location: 647676 - 650795 (+)
Type: TC
Location: 647676 - 650795 (+)
Gene ID: A41_contig_166_518
Type: pfam
Location: 650826 - 652427 (+)
Type: pfam
Location: 650826 - 652427 (+)
Gene ID: A41_contig_166_519
Type: pfam
Location: 652458 - 653615 (+)
Type: pfam
Location: 652458 - 653615 (+)
Gene ID: A41_contig_166_520
Type: CAZyme
Location: 653623 - 654747 (+)
Type: CAZyme
Location: 653623 - 654747 (+)
Gene ID: A41_contig_166_521
Type: pfam
Location: 654928 - 656124 (-)
Type: pfam
Location: 654928 - 656124 (-)
Gene ID: A41_contig_166_522
Type:
Location: 656339 - 656506 (-)
Type:
Location: 656339 - 656506 (-)
Gene ID: A41_contig_166_523
Type: CAZyme
Location: 656887 - 658842 (+)
Type: CAZyme
Location: 656887 - 658842 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_510 | vegetarian > omnivore | 1.10666 | 0.03780 |
| A41_contig_166_510 | vegetarian > vegan | 1.04484 | 0.01450 |
| A41_contig_166_512 | vegetarian > omnivore | 1.05101 | 0.03780 |
| A41_contig_166_513 | vegetarian > omnivore | 1.15412 | 0.03780 |
| A41_contig_166_515 | vegetarian > omnivore | 1.03895 | 0.03780 |
| A41_contig_166_515 | vegetarian > vegan | 1.15085 | 0.01450 |