Cluster: A41.CMAG_2_CGC41
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00551
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_2803 | 3202794 | 3204023 | + | 2.A.1.46.5 |
| NULL(UNKNOWN) | A41_contig_166 | A41_contig_166_2804 | 3204036 | 3205166 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | A41_contig_166 | A41_contig_166_2805 | 3205571 | 3206452 | - | THF_DHG_CYH | THF_DHG_CYH_C |
| CAZyme | A41_contig_166 | A41_contig_166_2806 | 3206640 | 3207665 | - | GT2 |
Gene ID: A41_contig_166_2803
Type: TC
Location: 3202794 - 3204023 (+)
Type: TC
Location: 3202794 - 3204023 (+)
Gene ID: A41_contig_166_2804
Type:
Location: 3204036 - 3205166 (-)
Type:
Location: 3204036 - 3205166 (-)
Gene ID: A41_contig_166_2805
Type: pfam
Location: 3205571 - 3206452 (-)
Type: pfam
Location: 3205571 - 3206452 (-)
Gene ID: A41_contig_166_2806
Type: CAZyme
Location: 3206640 - 3207665 (-)
Type: CAZyme
Location: 3206640 - 3207665 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_2804 | vegetarian > omnivore | 1.09482 | 0.03780 |