Cluster: A41.CMAG_2_CGC29
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 4
- Substrate: beta-mannan
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00129
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | A41_contig_166 | A41_contig_166_1568 | 1830884 | 1831990 | + | GH26 |
| CAZyme | A41_contig_166 | A41_contig_166_1569 | 1832012 | 1833187 | + | GH130_1 |
| TC | A41_contig_166 | A41_contig_166_1570 | 1833213 | 1834604 | + | 2.A.2.3.6 |
| pfam | A41_contig_166 | A41_contig_166_1571 | 1834597 | 1835793 | + | GlcNAc_2-epim |
| CAZyme | A41_contig_166 | A41_contig_166_1572 | 1835889 | 1838333 | + | GH2 |
| CAZyme | A41_contig_166 | A41_contig_166_1573 | 1838338 | 1840677 | + | GH3 |
Gene ID: A41_contig_166_1568
Type: CAZyme
Location: 1830884 - 1831990 (+)
Type: CAZyme
Location: 1830884 - 1831990 (+)
Gene ID: A41_contig_166_1569
Type: CAZyme
Location: 1832012 - 1833187 (+)
Type: CAZyme
Location: 1832012 - 1833187 (+)
Gene ID: A41_contig_166_1570
Type: TC
Location: 1833213 - 1834604 (+)
Type: TC
Location: 1833213 - 1834604 (+)
Gene ID: A41_contig_166_1571
Type: pfam
Location: 1834597 - 1835793 (+)
Type: pfam
Location: 1834597 - 1835793 (+)
Gene ID: A41_contig_166_1572
Type: CAZyme
Location: 1835889 - 1838333 (+)
Type: CAZyme
Location: 1835889 - 1838333 (+)
Gene ID: A41_contig_166_1573
Type: CAZyme
Location: 1838338 - 1840677 (+)
Type: CAZyme
Location: 1838338 - 1840677 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.