Cluster: A41.CMAG_2_CGC40
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: A41.CMAG_2
- CGC Family ID: CGCFAM_00479
- Continent: Asia
- Source Study: Jin et al., 2023 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | A41_contig_166 | A41_contig_166_2745 | 3132113 | 3133420 | + | 2.A.66.1.4 |
| pfam | A41_contig_166 | A41_contig_166_2746 | 3133351 | 3134472 | - | Sel1 | Sel1 |
| pfam | A41_contig_166 | A41_contig_166_2747 | 3134469 | 3135485 | - | AI-2E_transport |
| CAZyme | A41_contig_166 | A41_contig_166_2748 | 3135878 | 3138211 | - | GH20 |
| pfam | A41_contig_166 | A41_contig_166_2749 | 3138316 | 3139260 | - | F5_F8_type_C | DUF4999 | F5_F8_type_C_2 |
| pfam | A41_contig_166 | A41_contig_166_2750 | 3139329 | 3140543 | - | BT_3987-like_N | Laminin_G_3 |
| CAZyme | A41_contig_166 | A41_contig_166_2751 | 3140556 | 3141695 | - | GH18 |
| TC | A41_contig_166 | A41_contig_166_2752 | 3141722 | 3143269 | - | 8.A.46.2.1 |
| TC | A41_contig_166 | A41_contig_166_2753 | 3143290 | 3146373 | - | 1.B.14.6.13 |
| CAZyme | A41_contig_166 | A41_contig_166_2754 | 3146546 | 3148603 | - | GH20 |
| CAZyme | A41_contig_166 | A41_contig_166_2755 | 3148611 | 3150950 | - | GH20 |
Gene ID: A41_contig_166_2745
Type: TC
Location: 3132113 - 3133420 (+)
Type: TC
Location: 3132113 - 3133420 (+)
Gene ID: A41_contig_166_2746
Type: pfam
Location: 3133351 - 3134472 (-)
Type: pfam
Location: 3133351 - 3134472 (-)
Gene ID: A41_contig_166_2747
Type: pfam
Location: 3134469 - 3135485 (-)
Type: pfam
Location: 3134469 - 3135485 (-)
Gene ID: A41_contig_166_2748
Type: CAZyme
Location: 3135878 - 3138211 (-)
Type: CAZyme
Location: 3135878 - 3138211 (-)
Gene ID: A41_contig_166_2749
Type: pfam
Location: 3138316 - 3139260 (-)
Type: pfam
Location: 3138316 - 3139260 (-)
Gene ID: A41_contig_166_2750
Type: pfam
Location: 3139329 - 3140543 (-)
Type: pfam
Location: 3139329 - 3140543 (-)
Gene ID: A41_contig_166_2751
Type: CAZyme
Location: 3140556 - 3141695 (-)
Type: CAZyme
Location: 3140556 - 3141695 (-)
Gene ID: A41_contig_166_2752
Type: TC
Location: 3141722 - 3143269 (-)
Type: TC
Location: 3141722 - 3143269 (-)
Gene ID: A41_contig_166_2753
Type: TC
Location: 3143290 - 3146373 (-)
Type: TC
Location: 3143290 - 3146373 (-)
Gene ID: A41_contig_166_2754
Type: CAZyme
Location: 3146546 - 3148603 (-)
Type: CAZyme
Location: 3146546 - 3148603 (-)
Gene ID: A41_contig_166_2755
Type: CAZyme
Location: 3148611 - 3150950 (-)
Type: CAZyme
Location: 3148611 - 3150950 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola coprocola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| A41_contig_166_2746 | vegetarian > vegan | 1.19413 | 0.01450 |
| A41_contig_166_2755 | vegetarian > vegan | 1.05288 | 0.01450 |