y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si034744m |
Family | GT47 |
Protein Properties | Length: 615 Molecular Weight: 67392.9 Isoelectric Point: 7.1395 |
Chromosome | Chromosome/Scaffold: 9 Start: 17582963 End: 17584807 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 180 | 523 | 0 |
GQYIYVQELPARFNKDMVQHCDKLSPWTDMCRYTTNGGFGPLLRGGKGAFQGTGAGWYDTDEHALDIIFHERIKRYECLTDDPSLAAAVFVPFYAGLDVA RHLWGNNVSARDELALDLAHHIAGRPEWRAMGGRDHFFVAGRTTWDFRRKADGQAEWGSKLLNLPAAQNMTALVVEASPWHLNDVAIPYPTAFHPASDED LFFWQDRVRALNRTHLFSFAGVARPGDAKSIEGRLVDQCKESPACALMECSTTGPDNKCESPASVMRLFQSSTFCLLPRAGTDTSRPAFDAVLAGCIPVF FHPASAYVQYSWHLPKSHTDYSVYIPEEDVRSKNASVEERLRKI |
Full Sequence |
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Protein Sequence Length: 615 Download |
MKRHNAGDLP LSAPAGDGSG GKRAVEKEEE AEDKMDKYDK GRIRCSRLCF LFALAATVSI 60 LARHCYAAGL GRGGNAGVVR IEAVHASPPP PSVRQDRKIV PIARREPSVS DHSPSAPVDA 120 GDDASWKPSA SEPAASDNGG KTTSSKEKHS PSPPRGSKYG GRPFARALAS ADNKNDLCGG 180 QYIYVQELPA RFNKDMVQHC DKLSPWTDMC RYTTNGGFGP LLRGGKGAFQ GTGAGWYDTD 240 EHALDIIFHE RIKRYECLTD DPSLAAAVFV PFYAGLDVAR HLWGNNVSAR DELALDLAHH 300 IAGRPEWRAM GGRDHFFVAG RTTWDFRRKA DGQAEWGSKL LNLPAAQNMT ALVVEASPWH 360 LNDVAIPYPT AFHPASDEDL FFWQDRVRAL NRTHLFSFAG VARPGDAKSI EGRLVDQCKE 420 SPACALMECS TTGPDNKCES PASVMRLFQS STFCLLPRAG TDTSRPAFDA VLAGCIPVFF 480 HPASAYVQYS WHLPKSHTDY SVYIPEEDVR SKNASVEERL RKIPPEVVGK MRDAVVGLIP 540 SVTYSDATSR LETTVKDAFD IAVAAVISKV TKLRRGIVDG RPEEEKIERY SWKYPLLGEG 600 QKAEDPHEWD PLFN* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-57 | 177 | 523 | 362 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM93699.1 | 0 | 45 | 613 | 15 | 595 | hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EEC67107.1 | 0 | 1 | 613 | 1 | 614 | hypothetical protein OsI_33904 [Oryza sativa Indica Group] |
GenBank | EEE51089.1 | 0 | 1 | 613 | 1 | 583 | hypothetical protein OsJ_31792 [Oryza sativa Japonica Group] |
RefSeq | NP_001064771.1 | 0 | 1 | 613 | 1 | 617 | Os10g0459700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002464523.1 | 0 | 1 | 614 | 1 | 613 | hypothetical protein SORBIDRAFT_01g020070 [Sorghum bicolor] |