y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.014G147800.1 |
Family | GT47 |
Protein Properties | Length: 485 Molecular Weight: 56147.7 Isoelectric Point: 7.7439 |
Chromosome | Chromosome/Scaffold: 14 Start: 11295196 End: 11296669 |
Description | Exostosin family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 49 | 392 | 0 |
SCEGRYIYVHHLPRRFNDDVLKNCSVLVKWLDMCPFLKNSGFGPQVENSEGVLSEKSWFTTNQFLLEVMFHERMKKYKCLTNNSSFANAIYVPFYAGLDA GRYLWGYNISMRDSLGSDLVKWLAQQPEWKRMWGRDHFFVLGRIGWDFRRQTDHDSDWGSKLMTLPESMNLTALSIETTSWSNEFAIPYPTYFHPSSDDE VFQWQNRMQSHNRRYLFAFAGAPRPSANDSIRKEIIHQCLASRRTCNFLRCNSGGESRCDNPAEVIKVFQDSVFCLQPPGDSYTRRSIFDSILAGCIPVF FHPFSAYAQYTWHLQRDYWRYSVFIPIDLVKDGFVSIKQVLLQI |
Full Sequence |
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Protein Sequence Length: 485 Download |
MFNQNASPDP LVDTDNPFID VIESLDHANN LAVNKNTTLA ARTKRPADSC EGRYIYVHHL 60 PRRFNDDVLK NCSVLVKWLD MCPFLKNSGF GPQVENSEGV LSEKSWFTTN QFLLEVMFHE 120 RMKKYKCLTN NSSFANAIYV PFYAGLDAGR YLWGYNISMR DSLGSDLVKW LAQQPEWKRM 180 WGRDHFFVLG RIGWDFRRQT DHDSDWGSKL MTLPESMNLT ALSIETTSWS NEFAIPYPTY 240 FHPSSDDEVF QWQNRMQSHN RRYLFAFAGA PRPSANDSIR KEIIHQCLAS RRTCNFLRCN 300 SGGESRCDNP AEVIKVFQDS VFCLQPPGDS YTRRSIFDSI LAGCIPVFFH PFSAYAQYTW 360 HLQRDYWRYS VFIPIDLVKD GFVSIKQVLL QISDNEMLAM RKEVIKLIPR VIYADPRSKL 420 QTLEDAFDIT LKGVLHRIGK VRKNINKGRD PSNGFAEENS WKMKLSGIGV EEEWDHFTDT 480 SMRY* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-63 | 49 | 392 | 359 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002280815.1 | 0 | 47 | 481 | 90 | 524 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002321098.1 | 0 | 1 | 484 | 1 | 484 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518606.1 | 0 | 34 | 477 | 60 | 497 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
RefSeq | XP_002518609.1 | 0 | 26 | 477 | 49 | 500 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
RefSeq | XP_002532518.1 | 0 | 48 | 467 | 100 | 523 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV145943 | 263 | 100 | 360 | 0 |
JK793974 | 238 | 125 | 362 | 0 |
ES802449 | 294 | 176 | 469 | 0 |
EY661612 | 258 | 184 | 441 | 0 |
ES802449 | 81 | 116 | 192 | 0.027 |
Sequence Alignments (This image is cropped. Click for full image.) |
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